miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 5' -60.8 NC_001973.1 + 130505 0.65 0.735285
Target:  5'- gAUCUUACGCGUCggcggauaacaucgUGCCuaaaccGAGCUCG-GCg -3'
miRNA:   3'- -UAGGAUGCGCGG--------------GCGG------CUCGAGCuCG- -5'
8039 5' -60.8 NC_001973.1 + 126274 0.66 0.72863
Target:  5'- -aCCUugGCGaUCUGgCGcucggucauGCUCGAGCg -3'
miRNA:   3'- uaGGAugCGC-GGGCgGCu--------CGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 106953 0.66 0.72863
Target:  5'- uUUCaGCGCGCCgGgCGcGCUCG-GCg -3'
miRNA:   3'- uAGGaUGCGCGGgCgGCuCGAGCuCG- -5'
8039 5' -60.8 NC_001973.1 + 27287 0.66 0.72863
Target:  5'- aAUCuUUGCGCGCCU--CGAGCUUGcGCa -3'
miRNA:   3'- -UAG-GAUGCGCGGGcgGCUCGAGCuCG- -5'
8039 5' -60.8 NC_001973.1 + 61180 0.66 0.72863
Target:  5'- -gCCgACGCuCCuCGCUGAacgcgcGCUCGGGCg -3'
miRNA:   3'- uaGGaUGCGcGG-GCGGCU------CGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 62958 0.66 0.719057
Target:  5'- -aCUUGCGCgaGCCCGCCG-GCgaucAGCg -3'
miRNA:   3'- uaGGAUGCG--CGGGCGGCuCGagc-UCG- -5'
8039 5' -60.8 NC_001973.1 + 83659 0.66 0.719057
Target:  5'- --gCUGCgGCgGCCCGCucgcuucgacgaCGAGCUCGcGCa -3'
miRNA:   3'- uagGAUG-CG-CGGGCG------------GCUCGAGCuCG- -5'
8039 5' -60.8 NC_001973.1 + 85156 0.66 0.719057
Target:  5'- cUgCUGCGCGCCCGaCUGG--UCGuAGCg -3'
miRNA:   3'- uAgGAUGCGCGGGC-GGCUcgAGC-UCG- -5'
8039 5' -60.8 NC_001973.1 + 51275 0.66 0.719057
Target:  5'- -gCCaGCaaaGCGUaaaCGCCcGGCUCGAGCa -3'
miRNA:   3'- uaGGaUG---CGCGg--GCGGcUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 127377 0.66 0.709415
Target:  5'- gAUUUUACGUGCCgGCaagGGGCaaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGg--CUCG--AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 124148 0.66 0.709415
Target:  5'- -aCCUGCGCGgCgaggcucgcuaCGCCGAcggaaugucgcGcCUCGAGCg -3'
miRNA:   3'- uaGGAUGCGCgG-----------GCGGCU-----------C-GAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 28646 0.66 0.709415
Target:  5'- aGUCCUGCagcuGCGCgaGCgCG-GCgUCGAGCg -3'
miRNA:   3'- -UAGGAUG----CGCGggCG-GCuCG-AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 115085 0.66 0.706509
Target:  5'- -gCCUcgGCGUCCGCCGAggcgcgaugucugaGC-CGGGCg -3'
miRNA:   3'- uaGGAugCGCGGGCGGCU--------------CGaGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 123141 0.66 0.699711
Target:  5'- -aCUUGCGCGCCagcaGCucucuCGAGgUCGGGUc -3'
miRNA:   3'- uaGGAUGCGCGGg---CG-----GCUCgAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 137002 0.66 0.689953
Target:  5'- -cCCUcgaGCGCGUgCGCCGGGUcgcCGaAGCg -3'
miRNA:   3'- uaGGA---UGCGCGgGCGGCUCGa--GC-UCG- -5'
8039 5' -60.8 NC_001973.1 + 22428 0.66 0.689953
Target:  5'- -gCCgcCGCGCCCGCgCccacggccuugGAGCugguguUCGAGCg -3'
miRNA:   3'- uaGGauGCGCGGGCG-G-----------CUCG------AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 70116 0.66 0.680151
Target:  5'- -gCCUcgGCGCCCGCggCGAugUCGAGCa -3'
miRNA:   3'- uaGGAugCGCGGGCG--GCUcgAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 58794 0.66 0.680151
Target:  5'- -aCCUGaGCGUgCG-CGAGCUgGAGCu -3'
miRNA:   3'- uaGGAUgCGCGgGCgGCUCGAgCUCG- -5'
8039 5' -60.8 NC_001973.1 + 104125 0.66 0.680151
Target:  5'- cGUCC--CGUGUCCGaggaCGAGgaCGAGCa -3'
miRNA:   3'- -UAGGauGCGCGGGCg---GCUCgaGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 69641 0.67 0.670312
Target:  5'- aGUCggGCGCGCCCuCCGuuuuGCUcCGcAGCa -3'
miRNA:   3'- -UAGgaUGCGCGGGcGGCu---CGA-GC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.