miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8051 3' -55.3 NC_001973.1 + 126630 0.66 0.930453
Target:  5'- -cUGAGCGGUuucUCuGCGCGc-GGCCUCg -3'
miRNA:   3'- aaACUCGCCG---GGcUGCGCauUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 30387 0.66 0.925105
Target:  5'- --gGuGCGGgCCGGCGCGgcGGCg-- -3'
miRNA:   3'- aaaCuCGCCgGGCUGCGCauUUGgag -5'
8051 3' -55.3 NC_001973.1 + 158262 0.66 0.919512
Target:  5'- --cGAGCuGCgCGACGCGc---CCUCg -3'
miRNA:   3'- aaaCUCGcCGgGCUGCGCauuuGGAG- -5'
8051 3' -55.3 NC_001973.1 + 121474 0.66 0.919512
Target:  5'- -aUGGGCGcGCCCGGCcaaaCGcGAGCCg- -3'
miRNA:   3'- aaACUCGC-CGGGCUGc---GCaUUUGGag -5'
8051 3' -55.3 NC_001973.1 + 110862 0.66 0.919512
Target:  5'- -gUGuacGCGuG-CCGGCGCGcGGACCUCg -3'
miRNA:   3'- aaACu--CGC-CgGGCUGCGCaUUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 25642 0.66 0.919512
Target:  5'- --aGGGCGcGCgUCGACGCGgagccgAAGCCgUCg -3'
miRNA:   3'- aaaCUCGC-CG-GGCUGCGCa-----UUUGG-AG- -5'
8051 3' -55.3 NC_001973.1 + 4315 0.66 0.907593
Target:  5'- -aUGAGCGcGCCCagccCGCGcucgacGACCUCu -3'
miRNA:   3'- aaACUCGC-CGGGcu--GCGCau----UUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 22612 0.66 0.901271
Target:  5'- --cGGGcCGGCCCGACGauuucgaGUGcGACCa- -3'
miRNA:   3'- aaaCUC-GCCGGGCUGCg------CAU-UUGGag -5'
8051 3' -55.3 NC_001973.1 + 23724 0.66 0.901271
Target:  5'- -cUGGGCucgcugacgGGCCCGACGgCGaccgcgcccGGCCUCa -3'
miRNA:   3'- aaACUCG---------CCGGGCUGC-GCau-------UUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 103711 0.66 0.901271
Target:  5'- --aGAGaugcCGGCCCgGGCGCGgcGACUguUCa -3'
miRNA:   3'- aaaCUC----GCCGGG-CUGCGCauUUGG--AG- -5'
8051 3' -55.3 NC_001973.1 + 2683 0.66 0.901271
Target:  5'- --cGAGCucGG-CCGACGCGUaAAAUCUUa -3'
miRNA:   3'- aaaCUCG--CCgGGCUGCGCA-UUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 126045 0.67 0.89471
Target:  5'- aUUUGAGCucugCCGACGCGUaAGACCg- -3'
miRNA:   3'- -AAACUCGccg-GGCUGCGCA-UUUGGag -5'
8051 3' -55.3 NC_001973.1 + 125635 0.67 0.89471
Target:  5'- aUUUGGGCGGgCCGuuCGgGUcgAGGCCUg -3'
miRNA:   3'- -AAACUCGCCgGGCu-GCgCA--UUUGGAg -5'
8051 3' -55.3 NC_001973.1 + 10711 0.67 0.89471
Target:  5'- --cGGGCGGCUCGAUgaGCGgc-ACCgUCg -3'
miRNA:   3'- aaaCUCGCCGGGCUG--CGCauuUGG-AG- -5'
8051 3' -55.3 NC_001973.1 + 28293 0.67 0.89471
Target:  5'- -gUG-GCGGCCgagCGcCGCGUcggcgcAAACCUCg -3'
miRNA:   3'- aaACuCGCCGG---GCuGCGCA------UUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 96049 0.67 0.887913
Target:  5'- -cUGGGCGGUCUGuuCGCGUGGGagaUCg -3'
miRNA:   3'- aaACUCGCCGGGCu-GCGCAUUUgg-AG- -5'
8051 3' -55.3 NC_001973.1 + 143316 0.67 0.887913
Target:  5'- --cGGGCgGGCCUGuCGUaGUGAACCgUCa -3'
miRNA:   3'- aaaCUCG-CCGGGCuGCG-CAUUUGG-AG- -5'
8051 3' -55.3 NC_001973.1 + 150900 0.67 0.887913
Target:  5'- --cGAGCucGG-CCGACGCGUAAGauCCUa -3'
miRNA:   3'- aaaCUCG--CCgGGCUGCGCAUUU--GGAg -5'
8051 3' -55.3 NC_001973.1 + 55851 0.67 0.880885
Target:  5'- --cGAGCGcGCCCGcaACGgCGgccGAACCUUu -3'
miRNA:   3'- aaaCUCGC-CGGGC--UGC-GCa--UUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 73820 0.67 0.873629
Target:  5'- ---cGGUGcGCCCGACGaaGgcGACCUCg -3'
miRNA:   3'- aaacUCGC-CGGGCUGCg-CauUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.