miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 5' -49.2 NC_001973.1 + 72470 0.66 0.998556
Target:  5'- ---cGAgCUcgGCgGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 16439 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 16517 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 71940 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72027 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72287 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 127435 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 127512 0.66 0.998255
Target:  5'- --cUGAgCUcgGCgGGCGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 129227 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 130541 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 130953 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 160387 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 160622 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 124275 0.66 0.997017
Target:  5'- ---gGGCCCgucgGCCGACGCu------ -3'
miRNA:   3'- cuaaCUGGGaa--CGGCUGCGcauuuua -5'
8052 5' -49.2 NC_001973.1 + 128290 0.66 0.997017
Target:  5'- uGAUUGGCCuCUUgaagcGCCGACGCc------ -3'
miRNA:   3'- -CUAACUGG-GAA-----CGGCUGCGcauuuua -5'
8052 5' -49.2 NC_001973.1 + 143840 0.66 0.997017
Target:  5'- aGGUUGAUCgaauugGCCGACGCGgGAAc- -3'
miRNA:   3'- -CUAACUGGgaa---CGGCUGCGCaUUUua -5'
8052 5' -49.2 NC_001973.1 + 124508 0.67 0.996469
Target:  5'- ---cGGCgCUgGCCGACGCGUucAAUc -3'
miRNA:   3'- cuaaCUGgGAaCGGCUGCGCAuuUUA- -5'
8052 5' -49.2 NC_001973.1 + 151347 0.67 0.995841
Target:  5'- aGAUUcGAgCUcgGCgGACGCGUAGGAUc -3'
miRNA:   3'- -CUAA-CUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 107313 0.67 0.995841
Target:  5'- ---gGGCCCgaUGCUGGCGCGccUGGAAg -3'
miRNA:   3'- cuaaCUGGGa-ACGGCUGCGC--AUUUUa -5'
8052 5' -49.2 NC_001973.1 + 20962 0.67 0.995125
Target:  5'- --cUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.