miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8057 5' -57.2 NC_001973.1 + 51452 0.66 0.877856
Target:  5'- aGGCCGCGa--GcCCGGGCGagcuCGAGCg -3'
miRNA:   3'- -UCGGCGUcagCaGGUCCGUgu--GCUUG- -5'
8057 5' -57.2 NC_001973.1 + 25973 0.66 0.87065
Target:  5'- cGUCGUcGUCGUCUcGGCGCuCGAccgGCg -3'
miRNA:   3'- uCGGCGuCAGCAGGuCCGUGuGCU---UG- -5'
8057 5' -57.2 NC_001973.1 + 21273 0.66 0.87065
Target:  5'- gAGCCGCGG-CGUCCgccGGGC-CGucgcucagucguCGGGCu -3'
miRNA:   3'- -UCGGCGUCaGCAGG---UCCGuGU------------GCUUG- -5'
8057 5' -57.2 NC_001973.1 + 93880 0.66 0.869917
Target:  5'- cAGCCGCAcaUGUUCuacGGCcugcgcuACACGAACa -3'
miRNA:   3'- -UCGGCGUcaGCAGGu--CCG-------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 52143 0.66 0.863231
Target:  5'- cGCCGCAGaaacUCGggcagCCgguGGGCGCcguacuuggcgACGAGCg -3'
miRNA:   3'- uCGGCGUC----AGCa----GG---UCCGUG-----------UGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 85215 0.66 0.863231
Target:  5'- cGUCGUGGUCGUCCAGcuuGUACuuGAu- -3'
miRNA:   3'- uCGGCGUCAGCAGGUC---CGUGugCUug -5'
8057 5' -57.2 NC_001973.1 + 89425 0.66 0.863231
Target:  5'- uGCuCGCGuaucaugCGUUCGGcGCGCACGGACc -3'
miRNA:   3'- uCG-GCGUca-----GCAGGUC-CGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 146578 0.66 0.855607
Target:  5'- cAGCUgGCAGgugcgaugCGUCagCAGGCACACGcuGCu -3'
miRNA:   3'- -UCGG-CGUCa-------GCAG--GUCCGUGUGCu-UG- -5'
8057 5' -57.2 NC_001973.1 + 7849 0.66 0.855607
Target:  5'- cGCCGCGcccGUCGagCuGGCGCGCcaGGGCg -3'
miRNA:   3'- uCGGCGU---CAGCagGuCCGUGUG--CUUG- -5'
8057 5' -57.2 NC_001973.1 + 78613 0.66 0.855607
Target:  5'- gAGuCCGCGGaCGaCgAGGC-CGCGGGCg -3'
miRNA:   3'- -UC-GGCGUCaGCaGgUCCGuGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 25895 0.66 0.847784
Target:  5'- cGuuGCg--CGUCCAGGCAaACGGAg -3'
miRNA:   3'- uCggCGucaGCAGGUCCGUgUGCUUg -5'
8057 5' -57.2 NC_001973.1 + 10032 0.66 0.847784
Target:  5'- aAGuuGUAGUCGUuguUCugguGGCGCACGuGCc -3'
miRNA:   3'- -UCggCGUCAGCA---GGu---CCGUGUGCuUG- -5'
8057 5' -57.2 NC_001973.1 + 157898 0.66 0.847784
Target:  5'- aGGUCGCGGcCG-CCGcGCcCGCGAGCg -3'
miRNA:   3'- -UCGGCGUCaGCaGGUcCGuGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 143487 0.66 0.847784
Target:  5'- cGGuCCGCGgcGUCGUCgAGGguCACGcuCa -3'
miRNA:   3'- -UC-GGCGU--CAGCAGgUCCguGUGCuuG- -5'
8057 5' -57.2 NC_001973.1 + 143087 0.66 0.846991
Target:  5'- uGuCCGCAGaCGUCgCAGuGCuucugcgGCGCGGACg -3'
miRNA:   3'- uC-GGCGUCaGCAG-GUC-CG-------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 138164 0.66 0.845399
Target:  5'- cGCCGCAGuucagagagcguguUCGUCCucuccauGGCggacaGCACGAcGCg -3'
miRNA:   3'- uCGGCGUC--------------AGCAGGu------CCG-----UGUGCU-UG- -5'
8057 5' -57.2 NC_001973.1 + 143804 0.66 0.839767
Target:  5'- gAGCuCGauaGGUCGUCCcuGUaguugaACACGAACa -3'
miRNA:   3'- -UCG-GCg--UCAGCAGGucCG------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 75503 0.66 0.839767
Target:  5'- gAGCCGCAGgcCGUCUcgcacGGagauucgaACGCGGACa -3'
miRNA:   3'- -UCGGCGUCa-GCAGGu----CCg-------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 124096 0.66 0.838955
Target:  5'- cGCCGCggcgaguauuucgAGUUGUaCAGaaucGCGCGCGAACg -3'
miRNA:   3'- uCGGCG-------------UCAGCAgGUC----CGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 22737 0.66 0.838955
Target:  5'- gAGCCGCGGcCGUaucugugCgAGGgGgGCGAGCu -3'
miRNA:   3'- -UCGGCGUCaGCA-------GgUCCgUgUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.