miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8058 5' -59.9 NC_001973.1 + 153435 0.66 0.790417
Target:  5'- --cGCCCaaccgggUCCGUCGcGCGC-CUCGg -3'
miRNA:   3'- aguCGGGg------AGGCAGCuCGCGuGAGCg -5'
8058 5' -59.9 NC_001973.1 + 27254 0.66 0.790417
Target:  5'- aCAGCUCCUUguaGUCGAGCauGUGgaCGCg -3'
miRNA:   3'- aGUCGGGGAGg--CAGCUCG--CGUgaGCG- -5'
8058 5' -59.9 NC_001973.1 + 28652 0.66 0.790417
Target:  5'- gCAGCUgCgcgagcgcggCGUCGAGCGCGCU-GCc -3'
miRNA:   3'- aGUCGGgGag--------GCAGCUCGCGUGAgCG- -5'
8058 5' -59.9 NC_001973.1 + 155642 0.66 0.790417
Target:  5'- gCAGCCgCUCCGgcgccCGAGUuaACUCcugaGCa -3'
miRNA:   3'- aGUCGGgGAGGCa----GCUCGcgUGAG----CG- -5'
8058 5' -59.9 NC_001973.1 + 23261 0.66 0.790417
Target:  5'- gCuGCCCCgCCGc---GCGCGCUUGCc -3'
miRNA:   3'- aGuCGGGGaGGCagcuCGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 61011 0.66 0.790417
Target:  5'- --cGCUCUUCCGgCGgaGGCGCGCgaCGCa -3'
miRNA:   3'- aguCGGGGAGGCaGC--UCGCGUGa-GCG- -5'
8058 5' -59.9 NC_001973.1 + 23684 0.66 0.790417
Target:  5'- -gGGCCUCcgCgCGUCGAcGCGCcaGCUgCGCg -3'
miRNA:   3'- agUCGGGGa-G-GCAGCU-CGCG--UGA-GCG- -5'
8058 5' -59.9 NC_001973.1 + 33044 0.66 0.790417
Target:  5'- cCAGCagaaCCagCCGUCGcuCGC-CUCGCc -3'
miRNA:   3'- aGUCGg---GGa-GGCAGCucGCGuGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 45625 0.66 0.790417
Target:  5'- aUCAGgUCCacgcgCuCGUCGAGCGCgGCgUCGUa -3'
miRNA:   3'- -AGUCgGGGa----G-GCAGCUCGCG-UG-AGCG- -5'
8058 5' -59.9 NC_001973.1 + 64032 0.66 0.789536
Target:  5'- gCGGCgCCCggaagCUGUucgucaaCGGGCGCACUcCGUu -3'
miRNA:   3'- aGUCG-GGGa----GGCA-------GCUCGCGUGA-GCG- -5'
8058 5' -59.9 NC_001973.1 + 28916 0.66 0.781553
Target:  5'- gCAGCUCCgagUCGUUGGGCuuGCaCGCg -3'
miRNA:   3'- aGUCGGGGa--GGCAGCUCGcgUGaGCG- -5'
8058 5' -59.9 NC_001973.1 + 71767 0.66 0.781553
Target:  5'- -gGGCCCCgCCGcCGAGCucgaggccggcgGCGCccccgUCGCc -3'
miRNA:   3'- agUCGGGGaGGCaGCUCG------------CGUG-----AGCG- -5'
8058 5' -59.9 NC_001973.1 + 112665 0.66 0.772564
Target:  5'- gUCAGCCUCUucagcuggCCGUUG-GCGCcgUCGUa -3'
miRNA:   3'- -AGUCGGGGA--------GGCAGCuCGCGugAGCG- -5'
8058 5' -59.9 NC_001973.1 + 21532 0.66 0.772564
Target:  5'- aCGuGCCUgauCUCggCGUCGGGCGCGC-CGUg -3'
miRNA:   3'- aGU-CGGG---GAG--GCAGCUCGCGUGaGCG- -5'
8058 5' -59.9 NC_001973.1 + 88562 0.66 0.772564
Target:  5'- gUCGGCgcgcgCCCUCCGcaCGcacuGGCGCGcCUCGUc -3'
miRNA:   3'- -AGUCG-----GGGAGGCa-GC----UCGCGU-GAGCG- -5'
8058 5' -59.9 NC_001973.1 + 89452 0.66 0.772564
Target:  5'- aCGGaCCCCUCgcggcucaCGUCGGGCGaCACguaGUc -3'
miRNA:   3'- aGUC-GGGGAG--------GCAGCUCGC-GUGag-CG- -5'
8058 5' -59.9 NC_001973.1 + 133476 0.66 0.772564
Target:  5'- -gAGCgCCagCGggCGAGCaCGCUCGCg -3'
miRNA:   3'- agUCGgGGagGCa-GCUCGcGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 26165 0.66 0.763459
Target:  5'- cCAGUUCCgCCGgcgCGGGCGCGuCgacggCGCu -3'
miRNA:   3'- aGUCGGGGaGGCa--GCUCGCGU-Ga----GCG- -5'
8058 5' -59.9 NC_001973.1 + 120506 0.66 0.763459
Target:  5'- gCGGCaCCUUuuGUCGGaCGagGCUCGCg -3'
miRNA:   3'- aGUCG-GGGAggCAGCUcGCg-UGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 43976 0.66 0.763459
Target:  5'- gCGGCCUCUCUGcCGgcgauccagcgcAGCGCccACUCGg -3'
miRNA:   3'- aGUCGGGGAGGCaGC------------UCGCG--UGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.