miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 3' -62.6 NC_001973.1 + 69641 0.66 0.654747
Target:  5'- aGUCGgGCGCGcCCUCCGUUU--UGCUc -3'
miRNA:   3'- -CGGCgCGCGCaGGGGGCGAAcuGCGA- -5'
8060 3' -62.6 NC_001973.1 + 86959 0.66 0.645042
Target:  5'- aGCCGacgGCGcCGUCcgCCCCGCccgcGGCGCc -3'
miRNA:   3'- -CGGCg--CGC-GCAG--GGGGCGaa--CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 47799 0.66 0.645042
Target:  5'- gGCCGCGCcggccgacGCGUgcgccaaaucgcCCgCCCGCUcgcuagucuUGACGUa -3'
miRNA:   3'- -CGGCGCG--------CGCA------------GG-GGGCGA---------ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 7712 0.66 0.645042
Target:  5'- -aCGaGCGCG-CCgCCCGCccgacUGACGCUg -3'
miRNA:   3'- cgGCgCGCGCaGG-GGGCGa----ACUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 81120 0.66 0.645042
Target:  5'- --gGCGCGCuugCgCCCCGacgUGACGCUc -3'
miRNA:   3'- cggCGCGCGca-G-GGGGCga-ACUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 86190 0.66 0.635329
Target:  5'- gGCCGagauGCagaGCGUUCCCCGauacGACGCg -3'
miRNA:   3'- -CGGCg---CG---CGCAGGGGGCgaa-CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 107254 0.66 0.635329
Target:  5'- aGCaCGCGCGCGgCgCgUCGCUUGAC-CUc -3'
miRNA:   3'- -CG-GCGCGCGCaG-GgGGCGAACUGcGA- -5'
8060 3' -62.6 NC_001973.1 + 98802 0.66 0.635329
Target:  5'- uGCCcgGCGCGaUGUCCa-CGCUcaUGACGCc -3'
miRNA:   3'- -CGG--CGCGC-GCAGGggGCGA--ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 59877 0.66 0.625613
Target:  5'- -aCGCGCGCGgCCCCaacgGC--GGCGCg -3'
miRNA:   3'- cgGCGCGCGCaGGGGg---CGaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 108445 0.66 0.625613
Target:  5'- cGCU-CGCGCGaCgCCCGCaccgUGugGCUg -3'
miRNA:   3'- -CGGcGCGCGCaGgGGGCGa---ACugCGA- -5'
8060 3' -62.6 NC_001973.1 + 3771 0.67 0.606201
Target:  5'- aCCGCGCGCG-CgCCCCGUccacgGcCGCc -3'
miRNA:   3'- cGGCGCGCGCaG-GGGGCGaa---CuGCGa -5'
8060 3' -62.6 NC_001973.1 + 105490 0.67 0.586859
Target:  5'- gGCCGgGCGCGUugCCgCCGUagUUGAgguCGCa -3'
miRNA:   3'- -CGGCgCGCGCA--GGgGGCG--AACU---GCGa -5'
8060 3' -62.6 NC_001973.1 + 71725 0.67 0.586859
Target:  5'- cGCCGC-CGCGcCCCCgGCgcc-CGCg -3'
miRNA:   3'- -CGGCGcGCGCaGGGGgCGaacuGCGa -5'
8060 3' -62.6 NC_001973.1 + 77367 0.67 0.586859
Target:  5'- cGCgGcCGCGCG-CCCgCGCgccGGCGCc -3'
miRNA:   3'- -CGgC-GCGCGCaGGGgGCGaa-CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 34356 0.67 0.577229
Target:  5'- aGUCGgGCGCGUcgcCCUCCGCgUUGGC-CUu -3'
miRNA:   3'- -CGGCgCGCGCA---GGGGGCG-AACUGcGA- -5'
8060 3' -62.6 NC_001973.1 + 45867 0.67 0.567635
Target:  5'- --gGCGCGCGcUCCUCgGCcgcGGCGCUg -3'
miRNA:   3'- cggCGCGCGC-AGGGGgCGaa-CUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 141953 0.67 0.567635
Target:  5'- cGCCgGCGgGCGaCCCCCaGCgguACGCg -3'
miRNA:   3'- -CGG-CGCgCGCaGGGGG-CGaacUGCGa -5'
8060 3' -62.6 NC_001973.1 + 38087 0.67 0.567635
Target:  5'- uGUCGCGgGCGUCUUUCGCgUUGAC-Ca -3'
miRNA:   3'- -CGGCGCgCGCAGGGGGCG-AACUGcGa -5'
8060 3' -62.6 NC_001973.1 + 126105 0.67 0.567635
Target:  5'- uGCCGaCGCGUGagCCCgGCcggguuaaUGACGCa -3'
miRNA:   3'- -CGGC-GCGCGCagGGGgCGa-------ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 95710 0.68 0.548573
Target:  5'- cGCCGacgGCGCGgugCgCCgGCUguUGGCGCa -3'
miRNA:   3'- -CGGCg--CGCGCa--GgGGgCGA--ACUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.