miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 5' -53.6 NC_001973.1 + 125609 0.66 0.973182
Target:  5'- cUUGACGCCGAUAaucuugacCGGAGAuuuGGGCGg -3'
miRNA:   3'- -AGUUGCGGCUGUc-------GUCUCUu--CUCGCg -5'
8060 5' -53.6 NC_001973.1 + 122634 0.66 0.973182
Target:  5'- -gGGCGCCGGCGuCGGucGAGAGaGCa -3'
miRNA:   3'- agUUGCGGCUGUcGUCucUUCUCgCG- -5'
8060 5' -53.6 NC_001973.1 + 26027 0.66 0.973182
Target:  5'- -aGACGaaCCGGCaAGCGGGcGAGuAGCGCu -3'
miRNA:   3'- agUUGC--GGCUG-UCGUCUcUUC-UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 94078 0.66 0.973182
Target:  5'- cUC-ACGCC--CGGCcuGGAGGccaaGGAGCGCa -3'
miRNA:   3'- -AGuUGCGGcuGUCG--UCUCU----UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 53041 0.66 0.972907
Target:  5'- aCGACG-UGAUGGUGGcuuuggaAGAAGGGCGCc -3'
miRNA:   3'- aGUUGCgGCUGUCGUC-------UCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 130105 0.66 0.972907
Target:  5'- -uGGCGUCGACAguccucGCAGAagcccguGAAGAccGCGCc -3'
miRNA:   3'- agUUGCGGCUGU------CGUCU-------CUUCU--CGCG- -5'
8060 5' -53.6 NC_001973.1 + 120184 0.66 0.972071
Target:  5'- uUCGACGUCGACGGUgauGGuuuugcccguGAGCGUu -3'
miRNA:   3'- -AGUUGCGGCUGUCG---UCucuu------CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 64100 0.66 0.970342
Target:  5'- gUCAAacagGCCGACGGCucGAcGggGcGGUGCc -3'
miRNA:   3'- -AGUUg---CGGCUGUCGu-CU-CuuC-UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 69311 0.66 0.970342
Target:  5'- aCAcUGCCGGCucguGCAGAGcuu-GCGCc -3'
miRNA:   3'- aGUuGCGGCUGu---CGUCUCuucuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 112110 0.66 0.970342
Target:  5'- cCuuCGCCGGCaaccGGUGGAcgGAGGGGCuGCa -3'
miRNA:   3'- aGuuGCGGCUG----UCGUCU--CUUCUCG-CG- -5'
8060 5' -53.6 NC_001973.1 + 121927 0.66 0.970342
Target:  5'- -aAACGCUGAgAG-GGAcGAGcGAGCGCa -3'
miRNA:   3'- agUUGCGGCUgUCgUCU-CUU-CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 55984 0.66 0.970342
Target:  5'- aCGACGCgaaaGACGcccugucCGGAGAGGcGCGCg -3'
miRNA:   3'- aGUUGCGg---CUGUc------GUCUCUUCuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 122988 0.66 0.970047
Target:  5'- -gAACGCCGuccaccgcggcCAGCAuGAgcgccucGAAGGGCGCc -3'
miRNA:   3'- agUUGCGGCu----------GUCGU-CU-------CUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 123387 0.66 0.967294
Target:  5'- gCAacGCGCCGuucgucaAGCGGAG-GGcGCGCa -3'
miRNA:   3'- aGU--UGCGGCug-----UCGUCUCuUCuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 14383 0.66 0.967294
Target:  5'- gCGAgGCCgGACAGUAGcccgcGAAcAGCGCu -3'
miRNA:   3'- aGUUgCGG-CUGUCGUCu----CUUcUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 142602 0.66 0.967294
Target:  5'- -gGGCGCa---AGCGGAGGcgcuccgaAGGGCGCg -3'
miRNA:   3'- agUUGCGgcugUCGUCUCU--------UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 158817 0.66 0.967294
Target:  5'- gUCAAauugaaGCCGGCGGCcGAGc---GCGCg -3'
miRNA:   3'- -AGUUg-----CGGCUGUCGuCUCuucuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 46216 0.66 0.967294
Target:  5'- --cGCGCgCGACGGCcGGGucauGuGCGCg -3'
miRNA:   3'- aguUGCG-GCUGUCGuCUCuu--CuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 55222 0.66 0.964031
Target:  5'- aCGGCGgaGGCGGCGGcGgcGGGCGg -3'
miRNA:   3'- aGUUGCggCUGUCGUCuCuuCUCGCg -5'
8060 5' -53.6 NC_001973.1 + 28404 0.66 0.964031
Target:  5'- gCGACGCCGuCAGU------GAGCGCg -3'
miRNA:   3'- aGUUGCGGCuGUCGucucuuCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.