miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8063 3' -61.3 NC_001973.1 + 120596 0.66 0.708604
Target:  5'- --cGCCgagUCGCGGuGCGCCuuccacGCCGCc -3'
miRNA:   3'- uacUGGa--GGCGCCuCGCGGuc----UGGCG- -5'
8063 3' -61.3 NC_001973.1 + 86448 0.66 0.708604
Target:  5'- -cGACggCCGCGGcGGCGgCGGAagCGCg -3'
miRNA:   3'- uaCUGgaGGCGCC-UCGCgGUCUg-GCG- -5'
8063 3' -61.3 NC_001973.1 + 56366 0.66 0.698928
Target:  5'- -cGACUcggcgCCGCGcucGGCGCCAGGCuCGg -3'
miRNA:   3'- uaCUGGa----GGCGCc--UCGCGGUCUG-GCg -5'
8063 3' -61.3 NC_001973.1 + 87110 0.66 0.698928
Target:  5'- cGUGugCgcgugCGCGGcgugcgcGCGCCGGugCGCc -3'
miRNA:   3'- -UACugGag---GCGCCu------CGCGGUCugGCG- -5'
8063 3' -61.3 NC_001973.1 + 83779 0.66 0.689201
Target:  5'- -cGACCUCgagucgguCGCGGcccGGCacucggacgaGCUGGGCCGCg -3'
miRNA:   3'- uaCUGGAG--------GCGCC---UCG----------CGGUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 109840 0.66 0.679429
Target:  5'- cUGcGCUUCCGCGGcGuCGCC--GCCGCc -3'
miRNA:   3'- uAC-UGGAGGCGCCuC-GCGGucUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 21261 0.66 0.679429
Target:  5'- cAUGuCCaaaucgagCCGCGGcgucCGCCGGGCCGUc -3'
miRNA:   3'- -UACuGGa-------GGCGCCuc--GCGGUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 47768 0.66 0.67845
Target:  5'- -cGGCCUCCuCGGcGCuccucagguccagGCCGG-CCGCg -3'
miRNA:   3'- uaCUGGAGGcGCCuCG-------------CGGUCuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 24260 0.67 0.649929
Target:  5'- cUGACCgugaucuauugUCCGCGcGGGCGCCu--CgGCg -3'
miRNA:   3'- uACUGG-----------AGGCGC-CUCGCGGucuGgCG- -5'
8063 3' -61.3 NC_001973.1 + 45851 0.67 0.649929
Target:  5'- -gGGCCUgggcgUCGCGGGcgcGCGCUccucGGCCGCg -3'
miRNA:   3'- uaCUGGA-----GGCGCCU---CGCGGu---CUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 63637 0.67 0.649929
Target:  5'- -cGGCCg-CGUGGGgcggcGCGCCGG-CCGCc -3'
miRNA:   3'- uaCUGGagGCGCCU-----CGCGGUCuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 23561 0.67 0.640058
Target:  5'- -cGACCgcagccggCCgGCGGAcGCGCC-GcCCGCg -3'
miRNA:   3'- uaCUGGa-------GG-CGCCU-CGCGGuCuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 8210 0.67 0.640058
Target:  5'- uUGGCg-CCGCuGGGcCGCCAaGCCGCg -3'
miRNA:   3'- uACUGgaGGCGcCUC-GCGGUcUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 39820 0.67 0.626232
Target:  5'- -cGGCCUCCGacaGGGgcuccgcGCGUcgaucgugcagaugCAGACCGCc -3'
miRNA:   3'- uaCUGGAGGCg--CCU-------CGCG--------------GUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 17873 0.67 0.620308
Target:  5'- -aGGCgUCCGCGucGCGCC--GCUGCg -3'
miRNA:   3'- uaCUGgAGGCGCcuCGCGGucUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 10409 0.67 0.610442
Target:  5'- cGUGACCagCC-CGG-GCGUCAGACaGCu -3'
miRNA:   3'- -UACUGGa-GGcGCCuCGCGGUCUGgCG- -5'
8063 3' -61.3 NC_001973.1 + 78609 0.67 0.610442
Target:  5'- -cGACgagUCCGCGGA-CGaCgAGGCCGCg -3'
miRNA:   3'- uaCUGg--AGGCGCCUcGC-GgUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 94519 0.67 0.603544
Target:  5'- -cGACCgCCGCcccgcccGGcGCGCCggucaucgacugggcGGACCGCa -3'
miRNA:   3'- uaCUGGaGGCG-------CCuCGCGG---------------UCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 144698 0.68 0.593708
Target:  5'- gAUGAacaucccCUUCCGCcguccgaggacaucGAGCGCCAGGCgGCg -3'
miRNA:   3'- -UACU-------GGAGGCGc-------------CUCGCGGUCUGgCG- -5'
8063 3' -61.3 NC_001973.1 + 96878 0.68 0.586838
Target:  5'- gGUGGCCgcggaucugugcgCgGCGGGcGCGUCGGAUCGUu -3'
miRNA:   3'- -UACUGGa------------GgCGCCU-CGCGGUCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.