miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8064 5' -50.2 NC_001973.1 + 76562 0.66 0.996877
Target:  5'- uGCGAucGGCGugAACgaauCGaGCGUGgCCg -3'
miRNA:   3'- gCGUU--UCGUugUUGau--GC-CGUACgGG- -5'
8064 5' -50.2 NC_001973.1 + 40489 0.66 0.996877
Target:  5'- gCGCGucAGCGGCcugaucACcgugACGGCGUGgCCCc -3'
miRNA:   3'- -GCGUu-UCGUUGu-----UGa---UGCCGUAC-GGG- -5'
8064 5' -50.2 NC_001973.1 + 145537 0.66 0.996877
Target:  5'- gCGCAAGGagcuCAACAAUcggcacaACGGCcUGCUCa -3'
miRNA:   3'- -GCGUUUC----GUUGUUGa------UGCCGuACGGG- -5'
8064 5' -50.2 NC_001973.1 + 118156 0.66 0.996877
Target:  5'- gCGUGAAGCuGCAGC-GCGGaCGcGCCg -3'
miRNA:   3'- -GCGUUUCGuUGUUGaUGCC-GUaCGGg -5'
8064 5' -50.2 NC_001973.1 + 96616 0.66 0.996877
Target:  5'- gCGCAcGGCuaccugucGCGGCcgGCGGCGcGCCa -3'
miRNA:   3'- -GCGUuUCGu-------UGUUGa-UGCCGUaCGGg -5'
8064 5' -50.2 NC_001973.1 + 115633 0.66 0.996824
Target:  5'- gCGCGAcaaggagaccgccAGCGuggACAGCcGCGGCuggGCCg -3'
miRNA:   3'- -GCGUU-------------UCGU---UGUUGaUGCCGua-CGGg -5'
8064 5' -50.2 NC_001973.1 + 28106 0.66 0.996317
Target:  5'- gGCGGAGCGACGACUGaacGCGauCCUc -3'
miRNA:   3'- gCGUUUCGUUGUUGAUgc-CGUacGGG- -5'
8064 5' -50.2 NC_001973.1 + 61050 0.66 0.996317
Target:  5'- gCGCGAcgcAGCAGCAGCgGgGGCGgguacagGCgCa -3'
miRNA:   3'- -GCGUU---UCGUUGUUGaUgCCGUa------CGgG- -5'
8064 5' -50.2 NC_001973.1 + 65333 0.66 0.996317
Target:  5'- gCGCGGAGCAGCAACgcuugaACGaGC-UGUUUc -3'
miRNA:   3'- -GCGUUUCGUUGUUGa-----UGC-CGuACGGG- -5'
8064 5' -50.2 NC_001973.1 + 10595 0.66 0.996317
Target:  5'- gGCAAAGUAuuGGCaguUGGCGagGCCCu -3'
miRNA:   3'- gCGUUUCGUugUUGau-GCCGUa-CGGG- -5'
8064 5' -50.2 NC_001973.1 + 6507 0.66 0.996317
Target:  5'- gGCuGGGCGGC-GCg--GGCGUGCCg -3'
miRNA:   3'- gCGuUUCGUUGuUGaugCCGUACGGg -5'
8064 5' -50.2 NC_001973.1 + 28940 0.66 0.996317
Target:  5'- aCGCGgcugGGGCGGCAGCgGgGGCcgGCa- -3'
miRNA:   3'- -GCGU----UUCGUUGUUGaUgCCGuaCGgg -5'
8064 5' -50.2 NC_001973.1 + 55835 0.66 0.996317
Target:  5'- uGCGGAcCGGCGAggGCGaGCGcGCCCg -3'
miRNA:   3'- gCGUUUcGUUGUUgaUGC-CGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 58637 0.66 0.996317
Target:  5'- aCGC---GCuuCGACgccgGCGGCGUGUUCa -3'
miRNA:   3'- -GCGuuuCGuuGUUGa---UGCCGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 10184 0.66 0.996317
Target:  5'- cCGCAcgAAGCcgucGCGGC-ACGGC--GCCCu -3'
miRNA:   3'- -GCGU--UUCGu---UGUUGaUGCCGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 157869 0.66 0.996257
Target:  5'- cCGCGAcgaGGCGcuGCGGCUcgugucggaggucGCGGCcgccgcGCCCg -3'
miRNA:   3'- -GCGUU---UCGU--UGUUGA-------------UGCCGua----CGGG- -5'
8064 5' -50.2 NC_001973.1 + 59142 0.66 0.995678
Target:  5'- gCGCAuacGCGACGAUcugGCGGUcgaGUGCUa -3'
miRNA:   3'- -GCGUuu-CGUUGUUGa--UGCCG---UACGGg -5'
8064 5' -50.2 NC_001973.1 + 58042 0.66 0.995678
Target:  5'- gGCuccGGCGGCGGCgGCGGCucuUGCa- -3'
miRNA:   3'- gCGuu-UCGUUGUUGaUGCCGu--ACGgg -5'
8064 5' -50.2 NC_001973.1 + 101961 0.66 0.995678
Target:  5'- uCGUgguGGCGGCGACgaUGCGcgccaGCGUGUCCg -3'
miRNA:   3'- -GCGuu-UCGUUGUUG--AUGC-----CGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 20417 0.66 0.995678
Target:  5'- uGCAcAGCGuuCAugcCUugGGCuAUGUCCg -3'
miRNA:   3'- gCGUuUCGUu-GUu--GAugCCG-UACGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.