miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8065 3' -55.6 NC_001973.1 + 143527 0.66 0.942877
Target:  5'- cGCGccCGAUGcuGGCCGGCUCGAA--GCCu -3'
miRNA:   3'- -UGUa-GCUGC--UCGGCCGGGUUUagCGG- -5'
8065 3' -55.6 NC_001973.1 + 67812 0.66 0.942877
Target:  5'- -gGUgGcCGGGUCGGUcugcaCCGAGUCGCUg -3'
miRNA:   3'- ugUAgCuGCUCGGCCG-----GGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 14554 0.66 0.942877
Target:  5'- --uUCGACG-GCCGGCCgg---CGCa -3'
miRNA:   3'- uguAGCUGCuCGGCCGGguuuaGCGg -5'
8065 3' -55.6 NC_001973.1 + 79542 0.66 0.942877
Target:  5'- cGCG-CGACGcacugaGGacaCGGCUCGAAcUCGCCg -3'
miRNA:   3'- -UGUaGCUGC------UCg--GCCGGGUUU-AGCGG- -5'
8065 3' -55.6 NC_001973.1 + 89687 0.66 0.942877
Target:  5'- uGCAccacUUGGCGAGCgGacuGCCCGAGcgCGUCa -3'
miRNA:   3'- -UGU----AGCUGCUCGgC---CGGGUUUa-GCGG- -5'
8065 3' -55.6 NC_001973.1 + 38660 0.66 0.942877
Target:  5'- -aGUCGgucuacGCGAG-CGGUCCuuuUCGCCa -3'
miRNA:   3'- ugUAGC------UGCUCgGCCGGGuuuAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 45615 0.66 0.942877
Target:  5'- cGCGUCGGCGAuCaGGUCCAcg-CGCUc -3'
miRNA:   3'- -UGUAGCUGCUcGgCCGGGUuuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 19412 0.66 0.938243
Target:  5'- uACGUCGACaacaagauauGCCcGCCCGAaagcGUCGCg -3'
miRNA:   3'- -UGUAGCUGcu--------CGGcCGGGUU----UAGCGg -5'
8065 3' -55.6 NC_001973.1 + 109582 0.66 0.938243
Target:  5'- --uUCGggcGCGAGCCGuccaCCAGucuGUCGCCg -3'
miRNA:   3'- uguAGC---UGCUCGGCcg--GGUU---UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 114433 0.66 0.938243
Target:  5'- uGCG-CG-CGAGCCGGCUCGcgaaGCUg -3'
miRNA:   3'- -UGUaGCuGCUCGGCCGGGUuuagCGG- -5'
8065 3' -55.6 NC_001973.1 + 115379 0.66 0.938243
Target:  5'- uACGUgGACGcgacccGCCGGCUgAGcgCGCa -3'
miRNA:   3'- -UGUAgCUGCu-----CGGCCGGgUUuaGCGg -5'
8065 3' -55.6 NC_001973.1 + 10805 0.66 0.938243
Target:  5'- gGCGcCGACG-G-CGGCgaGAAUCGCCa -3'
miRNA:   3'- -UGUaGCUGCuCgGCCGggUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 35162 0.66 0.938243
Target:  5'- ---aUGGCGAcGCUGGCgCGAcgcagcgaccucGUCGCCg -3'
miRNA:   3'- uguaGCUGCU-CGGCCGgGUU------------UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 48873 0.66 0.937767
Target:  5'- uGCucggCGGCGAGCaacaagucaaauuUGGgCCAAggacAUCGCCa -3'
miRNA:   3'- -UGua--GCUGCUCG-------------GCCgGGUU----UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 68580 0.66 0.937289
Target:  5'- aGCGUCGuugauaagcuacCGAGa-GGUCCAGcgCGCCg -3'
miRNA:   3'- -UGUAGCu-----------GCUCggCCGGGUUuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 136991 0.66 0.933375
Target:  5'- aACAguaGAgccccuCGAGCgCGuGCgCCGGGUCGCCg -3'
miRNA:   3'- -UGUag-CU------GCUCG-GC-CG-GGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 8170 0.66 0.933375
Target:  5'- cCGUCGGCGGGUcgaCGGaCgAGcgCGCCg -3'
miRNA:   3'- uGUAGCUGCUCG---GCCgGgUUuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 55654 0.66 0.933375
Target:  5'- cGCGUCGGauggGAGCCgaGGCCgGcggugAAUCGCg -3'
miRNA:   3'- -UGUAGCUg---CUCGG--CCGGgU-----UUAGCGg -5'
8065 3' -55.6 NC_001973.1 + 94427 0.66 0.933375
Target:  5'- ---cCGGCGGcGuuGGCCCGucgCGCUa -3'
miRNA:   3'- uguaGCUGCU-CggCCGGGUuuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 131709 0.66 0.933375
Target:  5'- aACAU-GGCGuGGuaGGCCCGgcGAUCGUCa -3'
miRNA:   3'- -UGUAgCUGC-UCggCCGGGU--UUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.