miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 5' -52 NC_001973.1 + 131770 0.66 0.98913
Target:  5'- cACGCGguugacgacggCgGCCG-GCUCGGUgaAGGg -3'
miRNA:   3'- aUGCGCa----------GgCGGCuCGAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 110115 0.66 0.98913
Target:  5'- uUACGUGgucaCCGgCGAGCUCAAc----- -3'
miRNA:   3'- -AUGCGCa---GGCgGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 83822 0.66 0.98913
Target:  5'- cGCGCG-CgGCgGAGCUCGAauc-GGa -3'
miRNA:   3'- aUGCGCaGgCGgCUCGAGUUaaauCC- -5'
8066 5' -52 NC_001973.1 + 1806 0.66 0.987658
Target:  5'- aACGCGUacugguccCCGCCGAGCgcgCAcacggccAGGc -3'
miRNA:   3'- aUGCGCA--------GGCGGCUCGa--GUuaaa---UCC- -5'
8066 5' -52 NC_001973.1 + 20066 0.66 0.987658
Target:  5'- aACGCGUacugguccCCGCCGAGCgagCAcacggccAGGc -3'
miRNA:   3'- aUGCGCA--------GGCGGCUCGa--GUuaaa---UCC- -5'
8066 5' -52 NC_001973.1 + 128104 0.66 0.987658
Target:  5'- aACGCGUacugguccCCGCCGAGCgagCAcacggccAGGc -3'
miRNA:   3'- aUGCGCA--------GGCGGCUCGa--GUuaaa---UCC- -5'
8066 5' -52 NC_001973.1 + 136679 0.66 0.987658
Target:  5'- aGCGCGaUCCGCaCGAucuGUUCG--UUGGGc -3'
miRNA:   3'- aUGCGC-AGGCG-GCU---CGAGUuaAAUCC- -5'
8066 5' -52 NC_001973.1 + 23204 0.66 0.984257
Target:  5'- cGCGCG-CCGaCGAGCgcgCAGUggcgcAGGg -3'
miRNA:   3'- aUGCGCaGGCgGCUCGa--GUUAaa---UCC- -5'
8066 5' -52 NC_001973.1 + 158787 0.66 0.98231
Target:  5'- gACGCccuGUUCGCCGAGaUCAGacagGGGg -3'
miRNA:   3'- aUGCG---CAGGCGGCUCgAGUUaaa-UCC- -5'
8066 5' -52 NC_001973.1 + 131550 0.66 0.98231
Target:  5'- aACGCGUCgGCgaacCGGGaCUCGAUguaAGGc -3'
miRNA:   3'- aUGCGCAGgCG----GCUC-GAGUUAaa-UCC- -5'
8066 5' -52 NC_001973.1 + 4224 0.67 0.980187
Target:  5'- gGCGCGcCUGCCGGcGCUCG-UUUGc- -3'
miRNA:   3'- aUGCGCaGGCGGCU-CGAGUuAAAUcc -5'
8066 5' -52 NC_001973.1 + 119177 0.67 0.980187
Target:  5'- gACGCGcCCGUCGAGC-CGAc----- -3'
miRNA:   3'- aUGCGCaGGCGGCUCGaGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 136430 0.67 0.980187
Target:  5'- cACGCG-CUGCgCGAGCgCAGgggcgcgUAGGg -3'
miRNA:   3'- aUGCGCaGGCG-GCUCGaGUUaa-----AUCC- -5'
8066 5' -52 NC_001973.1 + 160411 0.67 0.980187
Target:  5'- uUACGCGUCgGCCGGugUCGAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUcgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 57443 0.67 0.978119
Target:  5'- gGCGUGcacgCCGCCGcGCUCuggaugcgcgcuugcAUUUGGGa -3'
miRNA:   3'- aUGCGCa---GGCGGCuCGAGu--------------UAAAUCC- -5'
8066 5' -52 NC_001973.1 + 109515 0.67 0.97788
Target:  5'- cGC-CGUUCGCCGcuuGGCUCuugcgcuUUUGGGg -3'
miRNA:   3'- aUGcGCAGGCGGC---UCGAGuu-----AAAUCC- -5'
8066 5' -52 NC_001973.1 + 26270 0.67 0.97512
Target:  5'- --aGCGUCCGCuuccaaCGAGCUCuccggcucgcuuaGAUUUAGu -3'
miRNA:   3'- augCGCAGGCG------GCUCGAG-------------UUAAAUCc -5'
8066 5' -52 NC_001973.1 + 127293 0.67 0.969774
Target:  5'- gAUGCGUCgGCCGcGCUCGGc----- -3'
miRNA:   3'- aUGCGCAGgCGGCuCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 113213 0.67 0.969774
Target:  5'- cACGCGUCCGCCGcguagacgGGCUUc------- -3'
miRNA:   3'- aUGCGCAGGCGGC--------UCGAGuuaaaucc -5'
8066 5' -52 NC_001973.1 + 3810 0.68 0.967927
Target:  5'- aGCGCGagCCGUCGAacaGCUCcaccggcucgccggcGAUUUGGGc -3'
miRNA:   3'- aUGCGCa-GGCGGCU---CGAG---------------UUAAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.