miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 3' -51.6 NC_001973.1 + 134353 0.66 0.989342
Target:  5'- ---cGCuCGACGCCGAg-GGGCGAUUg -3'
miRNA:   3'- uaaaCGuGCUGCGGUUggUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 111935 0.66 0.989342
Target:  5'- --gUGCGCGGCGgcgacuucuCCGACCcGGCGGc- -3'
miRNA:   3'- uaaACGUGCUGC---------GGUUGGuCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 13700 0.66 0.989342
Target:  5'- ---cGCACcaGCGaUCGAUCAGGCGGUCc -3'
miRNA:   3'- uaaaCGUGc-UGC-GGUUGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 11024 0.66 0.989342
Target:  5'- ---gGCGCuGCGUCAGCgAG-CGGUCg -3'
miRNA:   3'- uaaaCGUGcUGCGGUUGgUCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 112076 0.66 0.987871
Target:  5'- ---gGCACG-CGUCucGACCAGugGAccaUCa -3'
miRNA:   3'- uaaaCGUGCuGCGG--UUGGUCugCU---AG- -5'
8068 3' -51.6 NC_001973.1 + 25845 0.66 0.987871
Target:  5'- ---cGCACGGCGCgCAGCaCAcGACGu-- -3'
miRNA:   3'- uaaaCGUGCUGCG-GUUG-GU-CUGCuag -5'
8068 3' -51.6 NC_001973.1 + 118023 0.66 0.986247
Target:  5'- ---aGCGCGuACGUguACCGGGCGccguUCg -3'
miRNA:   3'- uaaaCGUGC-UGCGguUGGUCUGCu---AG- -5'
8068 3' -51.6 NC_001973.1 + 24931 0.66 0.986247
Target:  5'- ---cGCGCGcaacGCGCCGuaCAGAgGAUCg -3'
miRNA:   3'- uaaaCGUGC----UGCGGUugGUCUgCUAG- -5'
8068 3' -51.6 NC_001973.1 + 109141 0.66 0.986247
Target:  5'- -cUUGgGCGcCGCCucgacgAGCCGGGCGAg- -3'
miRNA:   3'- uaAACgUGCuGCGG------UUGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 118109 0.66 0.986247
Target:  5'- gGUggGCGCGGCGCuCAAgCAGgugGCGcgCg -3'
miRNA:   3'- -UAaaCGUGCUGCG-GUUgGUC---UGCuaG- -5'
8068 3' -51.6 NC_001973.1 + 132116 0.66 0.986247
Target:  5'- aGUUUGCACGG-GCCGuaGCCA--UGGUCg -3'
miRNA:   3'- -UAAACGUGCUgCGGU--UGGUcuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 95405 0.66 0.986075
Target:  5'- ---gGCAagGGCGCCAACCcgcugcuGGGCGAc- -3'
miRNA:   3'- uaaaCGUg-CUGCGGUUGG-------UCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 46799 0.66 0.985195
Target:  5'- aGUUUGCcagagacgggauuuuACGAcCGCCGACaAGACGcgCa -3'
miRNA:   3'- -UAAACG---------------UGCU-GCGGUUGgUCUGCuaG- -5'
8068 3' -51.6 NC_001973.1 + 7749 0.66 0.984461
Target:  5'- ---gGUGCGGCGCgAACCGcGGCGGc- -3'
miRNA:   3'- uaaaCGUGCUGCGgUUGGU-CUGCUag -5'
8068 3' -51.6 NC_001973.1 + 35069 0.66 0.984461
Target:  5'- ---cGcCGCGGCGCCGACguGaaGCGGUa -3'
miRNA:   3'- uaaaC-GUGCUGCGGUUGguC--UGCUAg -5'
8068 3' -51.6 NC_001973.1 + 56466 0.66 0.984461
Target:  5'- ---gGCuCGGCGCCAAgcUCGGGCGGg- -3'
miRNA:   3'- uaaaCGuGCUGCGGUU--GGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 56493 0.66 0.984461
Target:  5'- ---gGCuCGGCGCCAAgcUCGGGCGGg- -3'
miRNA:   3'- uaaaCGuGCUGCGGUU--GGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 56520 0.66 0.984461
Target:  5'- ---gGCuCGGCGCCAAgcUCGGGCGGg- -3'
miRNA:   3'- uaaaCGuGCUGCGGUU--GGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 115780 0.66 0.984461
Target:  5'- ---cGCGCGGCcgacaucaaaGCCAGCCucGGCGAg- -3'
miRNA:   3'- uaaaCGUGCUG----------CGGUUGGu-CUGCUag -5'
8068 3' -51.6 NC_001973.1 + 8524 0.66 0.984461
Target:  5'- -aUUGCGCGACGCuCGGCUccaagAGACu--- -3'
miRNA:   3'- uaAACGUGCUGCG-GUUGG-----UCUGcuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.