Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 15691 | 0.66 | 0.768946 |
Target: 5'- --cGCCGGAaC-CGUCGagcCGUUGAACGc -3' miRNA: 3'- acaUGGCCUaGuGCAGC---GCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 6029 | 0.66 | 0.747918 |
Target: 5'- gGUAaacGAUCugGUCaGUGCUGAACu -3' miRNA: 3'- aCAUggcCUAGugCAG-CGCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 34132 | 0.66 | 0.737212 |
Target: 5'- cGUGcCCGGGUgUGCGUC-CGCcgGAGCGu -3' miRNA: 3'- aCAU-GGCCUA-GUGCAGcGCGa-CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 32106 | 0.66 | 0.733978 |
Target: 5'- cGUGCCGuGAUgaccccggcucaggCGCGUCaGCuugccgcaugGCUGAACGa -3' miRNA: 3'- aCAUGGC-CUA--------------GUGCAG-CG----------CGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 5281 | 0.66 | 0.726396 |
Target: 5'- -uUACCGGccuUCGugcCGUCGCGCUucucagGGGCGa -3' miRNA: 3'- acAUGGCCu--AGU---GCAGCGCGA------CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 36434 | 0.66 | 0.726396 |
Target: 5'- --aGCCGGAccaugcccauUCGCuGUgCGCGCUGA-CGa -3' miRNA: 3'- acaUGGCCU----------AGUG-CA-GCGCGACUuGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 24314 | 0.66 | 0.726396 |
Target: 5'- cGUGCCGGggCuuGUCGuCGUUcAGCGu -3' miRNA: 3'- aCAUGGCCuaGugCAGC-GCGAcUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 29806 | 0.67 | 0.70448 |
Target: 5'- aGUuCCGG-UC-CGUCGUGCUcAACGa -3' miRNA: 3'- aCAuGGCCuAGuGCAGCGCGAcUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 38184 | 0.67 | 0.682267 |
Target: 5'- cGUGCCGGAgCAa-UCGCcCUGggUGg -3' miRNA: 3'- aCAUGGCCUaGUgcAGCGcGACuuGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 13243 | 0.67 | 0.671079 |
Target: 5'- --cGCCGGAaCGC-UCaCGCUGAACGc -3' miRNA: 3'- acaUGGCCUaGUGcAGcGCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 4535 | 0.68 | 0.659853 |
Target: 5'- --gACCGuuGGUCGCGaCGuCGCUGAGCu -3' miRNA: 3'- acaUGGC--CUAGUGCaGC-GCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 31473 | 0.68 | 0.6486 |
Target: 5'- cGUcCCGGGUUGCGgCGCucuuccGCUGAGCu -3' miRNA: 3'- aCAuGGCCUAGUGCaGCG------CGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 14380 | 0.68 | 0.6486 |
Target: 5'- -uUACCGGcacgacGUCcCG-CGCGCUGGGCa -3' miRNA: 3'- acAUGGCC------UAGuGCaGCGCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 30925 | 0.68 | 0.637331 |
Target: 5'- aGUGCUuGAgaAUGUCGCGCUGAgugGCGc -3' miRNA: 3'- aCAUGGcCUagUGCAGCGCGACU---UGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 19875 | 0.68 | 0.614788 |
Target: 5'- cGUGCCGGGggccgaCGCGauucaCGCGCUccgGAACGc -3' miRNA: 3'- aCAUGGCCUa-----GUGCa----GCGCGA---CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 6736 | 0.68 | 0.603536 |
Target: 5'- --cGCCGGG-CAauccgGUCGaCGCUGAGCGc -3' miRNA: 3'- acaUGGCCUaGUg----CAGC-GCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 38594 | 0.68 | 0.602412 |
Target: 5'- cUGaACCGGcccccGUCGCGcucgacuUCGCGCUGAAgGu -3' miRNA: 3'- -ACaUGGCC-----UAGUGC-------AGCGCGACUUgC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 39786 | 0.69 | 0.581118 |
Target: 5'- uUGUugCGGAgCGCGcCGaCGCccUGAACGc -3' miRNA: 3'- -ACAugGCCUaGUGCaGC-GCG--ACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 9028 | 0.69 | 0.569971 |
Target: 5'- --cGCCGGuAUCGCuGagGCGCUuGAGCGg -3' miRNA: 3'- acaUGGCC-UAGUG-CagCGCGA-CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 1745 | 0.69 | 0.569971 |
Target: 5'- -uUACCGGGUCGUGUCGgcggaCGCcGGACGg -3' miRNA: 3'- acAUGGCCUAGUGCAGC-----GCGaCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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