miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 5' -53.5 NC_001978.2 + 15691 0.66 0.768946
Target:  5'- --cGCCGGAaC-CGUCGagcCGUUGAACGc -3'
miRNA:   3'- acaUGGCCUaGuGCAGC---GCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 41182 0.71 0.442458
Target:  5'- cUGUGCCugauaGGUgGCGUgGUGCUGAGCa -3'
miRNA:   3'- -ACAUGGc----CUAgUGCAgCGCGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 6751 0.69 0.569971
Target:  5'- cGUaGCCGG-UCACGuugguuggcuUCGCGCcgGAGCGc -3'
miRNA:   3'- aCA-UGGCCuAGUGC----------AGCGCGa-CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 38594 0.68 0.602412
Target:  5'- cUGaACCGGcccccGUCGCGcucgacuUCGCGCUGAAgGu -3'
miRNA:   3'- -ACaUGGCC-----UAGUGC-------AGCGCGACUUgC- -5'
8073 5' -53.5 NC_001978.2 + 31473 0.68 0.6486
Target:  5'- cGUcCCGGGUUGCGgCGCucuuccGCUGAGCu -3'
miRNA:   3'- aCAuGGCCUAGUGCaGCG------CGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 29806 0.67 0.70448
Target:  5'- aGUuCCGG-UC-CGUCGUGCUcAACGa -3'
miRNA:   3'- aCAuGGCCuAGuGCAGCGCGAcUUGC- -5'
8073 5' -53.5 NC_001978.2 + 39410 0.79 0.162056
Target:  5'- --gGCCGGAgcgugaUCGgGUCGCGCUGAAUGc -3'
miRNA:   3'- acaUGGCCU------AGUgCAGCGCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 14987 0.71 0.48336
Target:  5'- cGUGCCGG--UACGcaCGCGCUGAuagACGa -3'
miRNA:   3'- aCAUGGCCuaGUGCa-GCGCGACU---UGC- -5'
8073 5' -53.5 NC_001978.2 + 30925 0.68 0.637331
Target:  5'- aGUGCUuGAgaAUGUCGCGCUGAgugGCGc -3'
miRNA:   3'- aCAUGGcCUagUGCAGCGCGACU---UGC- -5'
8073 5' -53.5 NC_001978.2 + 5281 0.66 0.726396
Target:  5'- -uUACCGGccuUCGugcCGUCGCGCUucucagGGGCGa -3'
miRNA:   3'- acAUGGCCu--AGU---GCAGCGCGA------CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 6029 0.66 0.747918
Target:  5'- gGUAaacGAUCugGUCaGUGCUGAACu -3'
miRNA:   3'- aCAUggcCUAGugCAG-CGCGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 39101 0.79 0.153201
Target:  5'- --cACCGGAUUACGUCGgGCUcGAACu -3'
miRNA:   3'- acaUGGCCUAGUGCAGCgCGA-CUUGc -5'
8073 5' -53.5 NC_001978.2 + 36434 0.66 0.726396
Target:  5'- --aGCCGGAccaugcccauUCGCuGUgCGCGCUGA-CGa -3'
miRNA:   3'- acaUGGCCU----------AGUG-CA-GCGCGACUuGC- -5'
8073 5' -53.5 NC_001978.2 + 4519 0.7 0.525996
Target:  5'- cGUGCCGGAagACGU-GCGCcccaguaggGAACGc -3'
miRNA:   3'- aCAUGGCCUagUGCAgCGCGa--------CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 1775 1.09 0.001233
Target:  5'- uUGUACCGGAUCACGUCGCGCUGAACGu -3'
miRNA:   3'- -ACAUGGCCUAGUGCAGCGCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 30251 0.72 0.403583
Target:  5'- gUGUGCCGucaacGGUCGCGUacacguaGCGCUcGAACGc -3'
miRNA:   3'- -ACAUGGC-----CUAGUGCAg------CGCGA-CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 19875 0.68 0.614788
Target:  5'- cGUGCCGGGggccgaCGCGauucaCGCGCUccgGAACGc -3'
miRNA:   3'- aCAUGGCCUa-----GUGCa----GCGCGA---CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 6736 0.68 0.603536
Target:  5'- --cGCCGGG-CAauccgGUCGaCGCUGAGCGc -3'
miRNA:   3'- acaUGGCCUaGUg----CAGC-GCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 39786 0.69 0.581118
Target:  5'- uUGUugCGGAgCGCGcCGaCGCccUGAACGc -3'
miRNA:   3'- -ACAugGCCUaGUGCaGC-GCG--ACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 9028 0.69 0.569971
Target:  5'- --cGCCGGuAUCGCuGagGCGCUuGAGCGg -3'
miRNA:   3'- acaUGGCC-UAGUG-CagCGCGA-CUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.