miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 39900 0.78 0.084979
Target:  5'- cGUCGuACGCGCCuGCCGCGCGgucuUCGUa -3'
miRNA:   3'- -CAGC-UGCGCGG-UGGCGCGUacu-AGCG- -5'
8076 3' -57.5 NC_001978.2 + 39846 0.67 0.483251
Target:  5'- cGUCGGCGCGCU-CCGCaaCAaGGuUCGCc -3'
miRNA:   3'- -CAGCUGCGCGGuGGCGc-GUaCU-AGCG- -5'
8076 3' -57.5 NC_001978.2 + 38632 0.68 0.423995
Target:  5'- -cCGACGUGCC-CgGCGCu---UCGCu -3'
miRNA:   3'- caGCUGCGCGGuGgCGCGuacuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 37865 0.68 0.405227
Target:  5'- uGUCGGCggggGCGCCGucccguacaacgUCGCGCGUGAgCGg -3'
miRNA:   3'- -CAGCUG----CGCGGU------------GGCGCGUACUaGCg -5'
8076 3' -57.5 NC_001978.2 + 37398 0.67 0.453096
Target:  5'- aUCGAUaGCGCCGCUGagGCAcUGAcCGCc -3'
miRNA:   3'- cAGCUG-CGCGGUGGCg-CGU-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 36566 0.69 0.360669
Target:  5'- gGUCGGCGUGgCA--GUGCAcuUGAUCGCu -3'
miRNA:   3'- -CAGCUGCGCgGUggCGCGU--ACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 35595 0.67 0.443274
Target:  5'- cGUCGGCGCGaCCgaagaccccgggACCGUGCccacaAUCGCc -3'
miRNA:   3'- -CAGCUGCGC-GG------------UGGCGCGuac--UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 35329 0.66 0.503882
Target:  5'- -gCGACgGCGCUugU-UGCGUGAUCGUu -3'
miRNA:   3'- caGCUG-CGCGGugGcGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 34327 0.67 0.452109
Target:  5'- -gCGugGCuccggcaagcuccGCCgACgGCGCAUGAcguaUCGCg -3'
miRNA:   3'- caGCugCG-------------CGG-UGgCGCGUACU----AGCG- -5'
8076 3' -57.5 NC_001978.2 + 33539 0.68 0.405227
Target:  5'- cGUUGcCGCuGCCAUUGCGgGUG-UCGCc -3'
miRNA:   3'- -CAGCuGCG-CGGUGGCGCgUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 33262 0.66 0.514339
Target:  5'- aGUUGG-GCGCUACgGCGUgaagGUGGUCGa -3'
miRNA:   3'- -CAGCUgCGCGGUGgCGCG----UACUAGCg -5'
8076 3' -57.5 NC_001978.2 + 32372 0.69 0.347151
Target:  5'- -gCGugGCGCCuucggcucaguaggcACgGCGCGUGAaCGUc -3'
miRNA:   3'- caGCugCGCGG---------------UGgCGCGUACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 32189 0.68 0.423995
Target:  5'- --gGACGCGCgCACCGCuGaggGAUgGCg -3'
miRNA:   3'- cagCUGCGCG-GUGGCG-CguaCUAgCG- -5'
8076 3' -57.5 NC_001978.2 + 32091 0.66 0.493517
Target:  5'- -aCGACGCGCCcCCGCucaGCcUGAagcucCGCc -3'
miRNA:   3'- caGCUGCGCGGuGGCG---CGuACUa----GCG- -5'
8076 3' -57.5 NC_001978.2 + 28893 0.71 0.268249
Target:  5'- cGUCGGCGagcgcuGCCAacaCGCGCAUuucGAUUGCc -3'
miRNA:   3'- -CAGCUGCg-----CGGUg--GCGCGUA---CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 28833 0.66 0.524884
Target:  5'- uGUUGGCaGCGCuCGCCGa-CGUGAagCGCa -3'
miRNA:   3'- -CAGCUG-CGCG-GUGGCgcGUACUa-GCG- -5'
8076 3' -57.5 NC_001978.2 + 28190 0.7 0.319643
Target:  5'- -aCGGCGCGCCugaacCCGUGCcuUGA-CGCc -3'
miRNA:   3'- caGCUGCGCGGu----GGCGCGu-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 27742 0.66 0.503882
Target:  5'- uGUUG-CGCGCC-CaGUGCAUGAacucacgaaggUCGCg -3'
miRNA:   3'- -CAGCuGCGCGGuGgCGCGUACU-----------AGCG- -5'
8076 3' -57.5 NC_001978.2 + 27448 0.66 0.514339
Target:  5'- -cUGACGCGCCuGCCGcCGCuaccGGUCccgGCa -3'
miRNA:   3'- caGCUGCGCGG-UGGC-GCGua--CUAG---CG- -5'
8076 3' -57.5 NC_001978.2 + 27051 0.66 0.503882
Target:  5'- uUCG-UGCGCUACuuCGCGCcgGAagagCGCg -3'
miRNA:   3'- cAGCuGCGCGGUG--GCGCGuaCUa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.