Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8077 | 5' | -57.7 | NC_001978.2 | + | 30008 | 0.66 | 0.51546 |
Target: 5'- cGGCGGACUgGGCGgcGCGAAUCgucucaaUGGUc -3' miRNA: 3'- -UCGCUUGG-CCGCuuCGCUUGG-------GCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 19127 | 0.67 | 0.443835 |
Target: 5'- cGCGAGCgCGGCaacaGGAGUGAgucaacgAUCCGGUu -3' miRNA: 3'- uCGCUUG-GCCG----CUUCGCU-------UGGGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 1459 | 0.74 | 0.144572 |
Target: 5'- cGGCuGACCGGCGAA-CGAACCCgucaGGUAg -3' miRNA: 3'- -UCGcUUGGCCGCUUcGCUUGGG----CCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 27289 | 0.66 | 0.474903 |
Target: 5'- cGgGAagaaACCGGCG-AGCGcAucggacgucGCCCGGUAc -3' miRNA: 3'- uCgCU----UGGCCGCuUCGC-U---------UGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 27886 | 0.68 | 0.379042 |
Target: 5'- cGGCGGcuUCGGCGAAGCGuccGCCCa--- -3' miRNA: 3'- -UCGCUu-GGCCGCUUCGCu--UGGGccau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 5977 | 1.06 | 0.000608 |
Target: 5'- gAGCGAACCGGCGAAGCGAACCCGGUAc -3' miRNA: 3'- -UCGCUUGGCCGCUUCGCUUGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8580 | 0.66 | 0.489287 |
Target: 5'- cGCGAACCGGCcuuguucagggaucGAGCGGcugACCCGuGa- -3' miRNA: 3'- uCGCUUGGCCGc-------------UUCGCU---UGGGC-Cau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 35041 | 0.66 | 0.505969 |
Target: 5'- uGCGGcauuacucgacACCccccagGGCGAAGCGGAUUgGGUAg -3' miRNA: 3'- uCGCU-----------UGG------CCGCUUCGCUUGGgCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8969 | 0.67 | 0.425368 |
Target: 5'- cGGCGAACaGGCGAGGgGcuuGCCCuugcugcgGGUGg -3' miRNA: 3'- -UCGCUUGgCCGCUUCgCu--UGGG--------CCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 1661 | 0.67 | 0.425368 |
Target: 5'- cGCGAAgcaaaUGGUGAAcGCGAGCCCGa-- -3' miRNA: 3'- uCGCUUg----GCCGCUU-CGCUUGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8086 | 0.68 | 0.379042 |
Target: 5'- cGGCGAAguucugauuccCCaGGCGAAGCacGAaaGCCCGGa- -3' miRNA: 3'- -UCGCUU-----------GG-CCGCUUCG--CU--UGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8811 | 0.68 | 0.361483 |
Target: 5'- aAGCGcGCCGGUcgGggGCGAAgCgGGg- -3' miRNA: 3'- -UCGCuUGGCCG--CuuCGCUUgGgCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 38590 | 0.68 | 0.361483 |
Target: 5'- cGGCGuucgggaCGGCGGAGC--GCCCGGa- -3' miRNA: 3'- -UCGCuug----GCCGCUUCGcuUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 36252 | 0.69 | 0.328094 |
Target: 5'- gAGuUGGGCacgaaGGCGAuuguGCGAACCCGGc- -3' miRNA: 3'- -UC-GCUUGg----CCGCUu---CGCUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 23501 | 0.7 | 0.288913 |
Target: 5'- gAGCGGAaggcagCGGCGAAGgaguacgacgcgcCGAACCCGGc- -3' miRNA: 3'- -UCGCUUg-----GCCGCUUC-------------GCUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 33932 | 0.7 | 0.27109 |
Target: 5'- aGGCG-ACCGGCGAAGagaucacggcgcuucUGAACCgGGg- -3' miRNA: 3'- -UCGCuUGGCCGCUUC---------------GCUUGGgCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 16423 | 0.71 | 0.252845 |
Target: 5'- aAGCGuggucggucuacccGGgCGGCGuGGUGAACCCGGUu -3' miRNA: 3'- -UCGC--------------UUgGCCGCuUCGCUUGGGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 11644 | 0.71 | 0.235622 |
Target: 5'- gGGCagGGACCGGCGccGGaCG-ACCCGGUAa -3' miRNA: 3'- -UCG--CUUGGCCGCu-UC-GCuUGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 36689 | 0.71 | 0.228893 |
Target: 5'- cGCGGaaccugagccgguACCGGCGGAGCcuGAGCCCGu-- -3' miRNA: 3'- uCGCU-------------UGGCCGCUUCG--CUUGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 20904 | 0.72 | 0.195527 |
Target: 5'- cGCuacGGCCGGaCGGAGCuuGCCCGGUAc -3' miRNA: 3'- uCGc--UUGGCC-GCUUCGcuUGGGCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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