miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8083 5' -54 NC_001978.2 + 9771 0.66 0.726396
Target:  5'- aCGCGuugcuGAAGCUCGAcccgucguCGGCCGUugagACGCu -3'
miRNA:   3'- -GUGCcc---UUUCGAGUU--------GCCGGCA----UGCG- -5'
8083 5' -54 NC_001978.2 + 20815 0.66 0.70448
Target:  5'- -uCGGuGAcAAGCUCGACGGaCUGaaggacgACGCg -3'
miRNA:   3'- guGCC-CU-UUCGAGUUGCC-GGCa------UGCG- -5'
8083 5' -54 NC_001978.2 + 32283 0.66 0.693405
Target:  5'- gCGCGcuGccGCUCAGCcucaGCCGUGCGCc -3'
miRNA:   3'- -GUGCccUuuCGAGUUGc---CGGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 25982 0.66 0.693405
Target:  5'- aACGGGcacGUUCAGCG--CGUACGCg -3'
miRNA:   3'- gUGCCCuuuCGAGUUGCcgGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 23595 0.66 0.70448
Target:  5'- uCACGGuGAuugccGGGUUCGGCGcGUCGUACu- -3'
miRNA:   3'- -GUGCC-CU-----UUCGAGUUGC-CGGCAUGcg -5'
8083 5' -54 NC_001978.2 + 39447 0.66 0.733979
Target:  5'- aGCGGGcucgauGAucgguccgcaaucaAGCUCGAcCGGCCGgaGCGUg -3'
miRNA:   3'- gUGCCC------UU--------------UCGAGUU-GCCGGCa-UGCG- -5'
8083 5' -54 NC_001978.2 + 13293 0.66 0.737213
Target:  5'- gGCGGGu--GCUCcauGACGGguaCGaGCGCa -3'
miRNA:   3'- gUGCCCuuuCGAG---UUGCCg--GCaUGCG- -5'
8083 5' -54 NC_001978.2 + 10693 0.66 0.737213
Target:  5'- aACGGucuuucGAAGCUgGGCGGCUuUGCGUc -3'
miRNA:   3'- gUGCCc-----UUUCGAgUUGCCGGcAUGCG- -5'
8083 5' -54 NC_001978.2 + 18331 0.67 0.659853
Target:  5'- gUugGGcGAAGGCUCAcccgaaGGUCGUcACGUc -3'
miRNA:   3'- -GugCC-CUUUCGAGUug----CCGGCA-UGCG- -5'
8083 5' -54 NC_001978.2 + 8210 0.67 0.659853
Target:  5'- gGCGccgucaucaaGGcAGGCUCAGCGgcucgcguGCCGUAUGCc -3'
miRNA:   3'- gUGC----------CCuUUCGAGUUGC--------CGGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 2332 0.67 0.659853
Target:  5'- gCACuGGGAAGCUC--CGGCgGaugACGCc -3'
miRNA:   3'- -GUGcCCUUUCGAGuuGCCGgCa--UGCG- -5'
8083 5' -54 NC_001978.2 + 12159 0.67 0.6486
Target:  5'- -uCGGGGGcacGGCUgGggGCGGCaCGUGgGCa -3'
miRNA:   3'- guGCCCUU---UCGAgU--UGCCG-GCAUgCG- -5'
8083 5' -54 NC_001978.2 + 41409 0.67 0.647474
Target:  5'- gGCGGGgcGGCUCcgaaguuGGCGGCgUGUGCc- -3'
miRNA:   3'- gUGCCCuuUCGAG-------UUGCCG-GCAUGcg -5'
8083 5' -54 NC_001978.2 + 9450 0.67 0.637331
Target:  5'- --aGGGAAucgGGCUCGACGGUaagACGg -3'
miRNA:   3'- gugCCCUU---UCGAGUUGCCGgcaUGCg -5'
8083 5' -54 NC_001978.2 + 38910 0.67 0.626057
Target:  5'- gGCGGGAAGGCgcuuACGGCUucgaGCu -3'
miRNA:   3'- gUGCCCUUUCGagu-UGCCGGcaugCG- -5'
8083 5' -54 NC_001978.2 + 19585 0.67 0.626057
Target:  5'- gACGGGc-AGCgCAACGGCaCGUuCGUu -3'
miRNA:   3'- gUGCCCuuUCGaGUUGCCG-GCAuGCG- -5'
8083 5' -54 NC_001978.2 + 18912 0.67 0.653104
Target:  5'- gACGGGcAGGCUCAggcgcuccgcaGCGucgauagcggggaacGCCGcGCGCa -3'
miRNA:   3'- gUGCCCuUUCGAGU-----------UGC---------------CGGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 14484 0.67 0.658729
Target:  5'- aACGGGAuuccaugAAGC-CAACGGaCGUaaaccgugcccaGCGCg -3'
miRNA:   3'- gUGCCCU-------UUCGaGUUGCCgGCA------------UGCG- -5'
8083 5' -54 NC_001978.2 + 33092 0.67 0.671079
Target:  5'- uCGCGGGcuuGCUUc-CGGCCGUA-GCc -3'
miRNA:   3'- -GUGCCCuuuCGAGuuGCCGGCAUgCG- -5'
8083 5' -54 NC_001978.2 + 4188 0.67 0.626057
Target:  5'- aGCGGGGgcAGGCUCAGgcucCGGCUcuuCGCc -3'
miRNA:   3'- gUGCCCU--UUCGAGUU----GCCGGcauGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.