miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8083 5' -54 NC_001978.2 + 7593 1.12 0.000591
Target:  5'- gCACGGGAAAGCUCAACGGCCGUACGCg -3'
miRNA:   3'- -GUGCCCUUUCGAGUUGCCGGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 4996 0.81 0.099683
Target:  5'- --aGGGAccgAAGCUCAGCGGUCGcACGCu -3'
miRNA:   3'- gugCCCU---UUCGAGUUGCCGGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 257 0.77 0.176202
Target:  5'- gACGGGGGcagcGGaCUCAGCGGCagCGUugGCg -3'
miRNA:   3'- gUGCCCUU----UC-GAGUUGCCG--GCAugCG- -5'
8083 5' -54 NC_001978.2 + 13875 0.76 0.213537
Target:  5'- cCACGGGugcGGCUC--CGGCCGU-CGCu -3'
miRNA:   3'- -GUGCCCuu-UCGAGuuGCCGGCAuGCG- -5'
8083 5' -54 NC_001978.2 + 18458 0.76 0.219394
Target:  5'- -cCGGGAAguccGGCUUcACGGCCGUagcgACGCc -3'
miRNA:   3'- guGCCCUU----UCGAGuUGCCGGCA----UGCG- -5'
8083 5' -54 NC_001978.2 + 15648 0.75 0.257466
Target:  5'- gGCGGcuucgcuGGGGCUCGACGGCgacaCGUACGCc -3'
miRNA:   3'- gUGCCc------UUUCGAGUUGCCG----GCAUGCG- -5'
8083 5' -54 NC_001978.2 + 20947 0.74 0.27845
Target:  5'- aGCGGGGAAGCUCGAuucccugccCGG-CGUACaGCc -3'
miRNA:   3'- gUGCCCUUUCGAGUU---------GCCgGCAUG-CG- -5'
8083 5' -54 NC_001978.2 + 14501 0.74 0.293182
Target:  5'- -cCGGGAAGGCcCGAC-GCCGgACGCg -3'
miRNA:   3'- guGCCCUUUCGaGUUGcCGGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 15395 0.73 0.324455
Target:  5'- aGCGGGAAGacgaacGC-CGACGuuGCCGUugGCg -3'
miRNA:   3'- gUGCCCUUU------CGaGUUGC--CGGCAugCG- -5'
8083 5' -54 NC_001978.2 + 12844 0.73 0.340998
Target:  5'- gGCGGGu-GGCgu--CGGCCGUAuCGCg -3'
miRNA:   3'- gUGCCCuuUCGaguuGCCGGCAU-GCG- -5'
8083 5' -54 NC_001978.2 + 30223 0.72 0.36694
Target:  5'- uGCGGGaAGAGCgCAACGGCa--ACGCc -3'
miRNA:   3'- gUGCCC-UUUCGaGUUGCCGgcaUGCG- -5'
8083 5' -54 NC_001978.2 + 38229 0.72 0.384973
Target:  5'- gCACGGGGAAGCcgcgccacgccuUCGggacgucaGCGGCucgcccCGUGCGCu -3'
miRNA:   3'- -GUGCCCUUUCG------------AGU--------UGCCG------GCAUGCG- -5'
8083 5' -54 NC_001978.2 + 30620 0.71 0.421781
Target:  5'- uCACGGGGAAcggacacguaccGCUCAagcacguagGCGGCUucgaugaGUGCGCc -3'
miRNA:   3'- -GUGCCCUUU------------CGAGU---------UGCCGG-------CAUGCG- -5'
8083 5' -54 NC_001978.2 + 2909 0.7 0.452503
Target:  5'- gGCGGGGGcacuccccagcGCUCGACGGCauugagGCGCg -3'
miRNA:   3'- gUGCCCUUu----------CGAGUUGCCGgca---UGCG- -5'
8083 5' -54 NC_001978.2 + 8498 0.7 0.462672
Target:  5'- uCACGGGucagccGCUCGACucccugaacaaGGCCGguuCGCg -3'
miRNA:   3'- -GUGCCCuuu---CGAGUUG-----------CCGGCau-GCG- -5'
8083 5' -54 NC_001978.2 + 24368 0.7 0.504484
Target:  5'- aUACGGGAuuGUUCAuCGGgcCCG-ACGCu -3'
miRNA:   3'- -GUGCCCUuuCGAGUuGCC--GGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 32215 0.69 0.515195
Target:  5'- gCACGGcuGAGGCUgAGCGGCa--GCGCg -3'
miRNA:   3'- -GUGCCc-UUUCGAgUUGCCGgcaUGCG- -5'
8083 5' -54 NC_001978.2 + 22100 0.69 0.547845
Target:  5'- -cCGGGGuGAGUaCGuCGGCCGUguGCGCg -3'
miRNA:   3'- guGCCCU-UUCGaGUuGCCGGCA--UGCG- -5'
8083 5' -54 NC_001978.2 + 29150 0.69 0.55225
Target:  5'- uCACGGGucggcgccugccGCUCGAcCGGaaCCGUACGUa -3'
miRNA:   3'- -GUGCCCuuu---------CGAGUU-GCC--GGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 23989 0.69 0.558877
Target:  5'- aAUGGGAAAGCgcggAACGGUCacugacUACGCg -3'
miRNA:   3'- gUGCCCUUUCGag--UUGCCGGc-----AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.