miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8083 5' -54 NC_001978.2 + 20815 0.66 0.70448
Target:  5'- -uCGGuGAcAAGCUCGACGGaCUGaaggacgACGCg -3'
miRNA:   3'- guGCC-CU-UUCGAGUUGCC-GGCa------UGCG- -5'
8083 5' -54 NC_001978.2 + 19585 0.67 0.626057
Target:  5'- gACGGGc-AGCgCAACGGCaCGUuCGUu -3'
miRNA:   3'- gUGCCCuuUCGaGUUGCCG-GCAuGCG- -5'
8083 5' -54 NC_001978.2 + 38910 0.67 0.626057
Target:  5'- gGCGGGAAGGCgcuuACGGCUucgaGCu -3'
miRNA:   3'- gUGCCCUUUCGagu-UGCCGGcaugCG- -5'
8083 5' -54 NC_001978.2 + 9450 0.67 0.637331
Target:  5'- --aGGGAAucgGGCUCGACGGUaagACGg -3'
miRNA:   3'- gugCCCUU---UCGAGUUGCCGgcaUGCg -5'
8083 5' -54 NC_001978.2 + 41409 0.67 0.647474
Target:  5'- gGCGGGgcGGCUCcgaaguuGGCGGCgUGUGCc- -3'
miRNA:   3'- gUGCCCuuUCGAG-------UUGCCG-GCAUGcg -5'
8083 5' -54 NC_001978.2 + 12159 0.67 0.6486
Target:  5'- -uCGGGGGcacGGCUgGggGCGGCaCGUGgGCa -3'
miRNA:   3'- guGCCCUU---UCGAgU--UGCCG-GCAUgCG- -5'
8083 5' -54 NC_001978.2 + 2332 0.67 0.659853
Target:  5'- gCACuGGGAAGCUC--CGGCgGaugACGCc -3'
miRNA:   3'- -GUGcCCUUUCGAGuuGCCGgCa--UGCG- -5'
8083 5' -54 NC_001978.2 + 8210 0.67 0.659853
Target:  5'- gGCGccgucaucaaGGcAGGCUCAGCGgcucgcguGCCGUAUGCc -3'
miRNA:   3'- gUGC----------CCuUUCGAGUUGC--------CGGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 18331 0.67 0.659853
Target:  5'- gUugGGcGAAGGCUCAcccgaaGGUCGUcACGUc -3'
miRNA:   3'- -GugCC-CUUUCGAGUug----CCGGCA-UGCG- -5'
8083 5' -54 NC_001978.2 + 39838 0.68 0.592309
Target:  5'- cCGCGcGGcAGGCgcguaCGACGGacCCGUugGCa -3'
miRNA:   3'- -GUGC-CCuUUCGa----GUUGCC--GGCAugCG- -5'
8083 5' -54 NC_001978.2 + 23989 0.69 0.558877
Target:  5'- aAUGGGAAAGCgcggAACGGUCacugacUACGCg -3'
miRNA:   3'- gUGCCCUUUCGag--UUGCCGGc-----AUGCG- -5'
8083 5' -54 NC_001978.2 + 29150 0.69 0.55225
Target:  5'- uCACGGGucggcgccugccGCUCGAcCGGaaCCGUACGUa -3'
miRNA:   3'- -GUGCCCuuu---------CGAGUU-GCC--GGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 14501 0.74 0.293182
Target:  5'- -cCGGGAAGGCcCGAC-GCCGgACGCg -3'
miRNA:   3'- guGCCCUUUCGaGUUGcCGGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 12844 0.73 0.340998
Target:  5'- gGCGGGu-GGCgu--CGGCCGUAuCGCg -3'
miRNA:   3'- gUGCCCuuUCGaguuGCCGGCAU-GCG- -5'
8083 5' -54 NC_001978.2 + 30223 0.72 0.36694
Target:  5'- uGCGGGaAGAGCgCAACGGCa--ACGCc -3'
miRNA:   3'- gUGCCC-UUUCGaGUUGCCGgcaUGCG- -5'
8083 5' -54 NC_001978.2 + 2909 0.7 0.452503
Target:  5'- gGCGGGGGcacuccccagcGCUCGACGGCauugagGCGCg -3'
miRNA:   3'- gUGCCCUUu----------CGAGUUGCCGgca---UGCG- -5'
8083 5' -54 NC_001978.2 + 8498 0.7 0.462672
Target:  5'- uCACGGGucagccGCUCGACucccugaacaaGGCCGguuCGCg -3'
miRNA:   3'- -GUGCCCuuu---CGAGUUG-----------CCGGCau-GCG- -5'
8083 5' -54 NC_001978.2 + 24368 0.7 0.504484
Target:  5'- aUACGGGAuuGUUCAuCGGgcCCG-ACGCu -3'
miRNA:   3'- -GUGCCCUuuCGAGUuGCC--GGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 32215 0.69 0.515195
Target:  5'- gCACGGcuGAGGCUgAGCGGCa--GCGCg -3'
miRNA:   3'- -GUGCCc-UUUCGAgUUGCCGgcaUGCG- -5'
8083 5' -54 NC_001978.2 + 22100 0.69 0.547845
Target:  5'- -cCGGGGuGAGUaCGuCGGCCGUguGCGCg -3'
miRNA:   3'- guGCCCU-UUCGaGUuGCCGGCA--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.