Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8083 | 5' | -54 | NC_001978.2 | + | 257 | 0.77 | 0.176202 |
Target: 5'- gACGGGGGcagcGGaCUCAGCGGCagCGUugGCg -3' miRNA: 3'- gUGCCCUU----UC-GAGUUGCCG--GCAugCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 2332 | 0.67 | 0.659853 |
Target: 5'- gCACuGGGAAGCUC--CGGCgGaugACGCc -3' miRNA: 3'- -GUGcCCUUUCGAGuuGCCGgCa--UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 2909 | 0.7 | 0.452503 |
Target: 5'- gGCGGGGGcacuccccagcGCUCGACGGCauugagGCGCg -3' miRNA: 3'- gUGCCCUUu----------CGAGUUGCCGgca---UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 4188 | 0.67 | 0.626057 |
Target: 5'- aGCGGGGgcAGGCUCAGgcucCGGCUcuuCGCc -3' miRNA: 3'- gUGCCCU--UUCGAGUU----GCCGGcauGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 4996 | 0.81 | 0.099683 |
Target: 5'- --aGGGAccgAAGCUCAGCGGUCGcACGCu -3' miRNA: 3'- gugCCCU---UUCGAGUUGCCGGCaUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 7593 | 1.12 | 0.000591 |
Target: 5'- gCACGGGAAAGCUCAACGGCCGUACGCg -3' miRNA: 3'- -GUGCCCUUUCGAGUUGCCGGCAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 8210 | 0.67 | 0.659853 |
Target: 5'- gGCGccgucaucaaGGcAGGCUCAGCGgcucgcguGCCGUAUGCc -3' miRNA: 3'- gUGC----------CCuUUCGAGUUGC--------CGGCAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 8498 | 0.7 | 0.462672 |
Target: 5'- uCACGGGucagccGCUCGACucccugaacaaGGCCGguuCGCg -3' miRNA: 3'- -GUGCCCuuu---CGAGUUG-----------CCGGCau-GCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 9450 | 0.67 | 0.637331 |
Target: 5'- --aGGGAAucgGGCUCGACGGUaagACGg -3' miRNA: 3'- gugCCCUU---UCGAGUUGCCGgcaUGCg -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 9771 | 0.66 | 0.726396 |
Target: 5'- aCGCGuugcuGAAGCUCGAcccgucguCGGCCGUugagACGCu -3' miRNA: 3'- -GUGCcc---UUUCGAGUU--------GCCGGCA----UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 10693 | 0.66 | 0.737213 |
Target: 5'- aACGGucuuucGAAGCUgGGCGGCUuUGCGUc -3' miRNA: 3'- gUGCCc-----UUUCGAgUUGCCGGcAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 11785 | 0.68 | 0.581118 |
Target: 5'- cCACGGGGAAGCcgcauccgugaUCAcgauggaaggGCGaGCCGcaACGCu -3' miRNA: 3'- -GUGCCCUUUCG-----------AGU----------UGC-CGGCa-UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 12159 | 0.67 | 0.6486 |
Target: 5'- -uCGGGGGcacGGCUgGggGCGGCaCGUGgGCa -3' miRNA: 3'- guGCCCUU---UCGAgU--UGCCG-GCAUgCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 12844 | 0.73 | 0.340998 |
Target: 5'- gGCGGGu-GGCgu--CGGCCGUAuCGCg -3' miRNA: 3'- gUGCCCuuUCGaguuGCCGGCAU-GCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 13293 | 0.66 | 0.737213 |
Target: 5'- gGCGGGu--GCUCcauGACGGguaCGaGCGCa -3' miRNA: 3'- gUGCCCuuuCGAG---UUGCCg--GCaUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 13875 | 0.76 | 0.213537 |
Target: 5'- cCACGGGugcGGCUC--CGGCCGU-CGCu -3' miRNA: 3'- -GUGCCCuu-UCGAGuuGCCGGCAuGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 14484 | 0.67 | 0.658729 |
Target: 5'- aACGGGAuuccaugAAGC-CAACGGaCGUaaaccgugcccaGCGCg -3' miRNA: 3'- gUGCCCU-------UUCGaGUUGCCgGCA------------UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 14501 | 0.74 | 0.293182 |
Target: 5'- -cCGGGAAGGCcCGAC-GCCGgACGCg -3' miRNA: 3'- guGCCCUUUCGaGUUGcCGGCaUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 15395 | 0.73 | 0.324455 |
Target: 5'- aGCGGGAAGacgaacGC-CGACGuuGCCGUugGCg -3' miRNA: 3'- gUGCCCUUU------CGaGUUGC--CGGCAugCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 15648 | 0.75 | 0.257466 |
Target: 5'- gGCGGcuucgcuGGGGCUCGACGGCgacaCGUACGCc -3' miRNA: 3'- gUGCCc------UUUCGAGUUGCCG----GCAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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