miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8083 5' -54 NC_001978.2 + 20947 0.74 0.27845
Target:  5'- aGCGGGGAAGCUCGAuucccugccCGG-CGUACaGCc -3'
miRNA:   3'- gUGCCCUUUCGAGUU---------GCCgGCAUG-CG- -5'
8083 5' -54 NC_001978.2 + 39447 0.66 0.733979
Target:  5'- aGCGGGcucgauGAucgguccgcaaucaAGCUCGAcCGGCCGgaGCGUg -3'
miRNA:   3'- gUGCCC------UU--------------UCGAGUU-GCCGGCa-UGCG- -5'
8083 5' -54 NC_001978.2 + 23595 0.66 0.70448
Target:  5'- uCACGGuGAuugccGGGUUCGGCGcGUCGUACu- -3'
miRNA:   3'- -GUGCC-CU-----UUCGAGUUGC-CGGCAUGcg -5'
8083 5' -54 NC_001978.2 + 18392 0.68 0.603536
Target:  5'- -uCGGGuGAGCcuucgcccaacUCAacGCGGCgCGUGCGUa -3'
miRNA:   3'- guGCCCuUUCG-----------AGU--UGCCG-GCAUGCG- -5'
8083 5' -54 NC_001978.2 + 22881 0.68 0.603536
Target:  5'- gCGCGGGGAcGGCggCGuugUGGCCGUGC-Ca -3'
miRNA:   3'- -GUGCCCUU-UCGa-GUu--GCCGGCAUGcG- -5'
8083 5' -54 NC_001978.2 + 25982 0.66 0.693405
Target:  5'- aACGGGcacGUUCAGCG--CGUACGCg -3'
miRNA:   3'- gUGCCCuuuCGAGUUGCcgGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 18912 0.67 0.653104
Target:  5'- gACGGGcAGGCUCAggcgcuccgcaGCGucgauagcggggaacGCCGcGCGCa -3'
miRNA:   3'- gUGCCCuUUCGAGU-----------UGC---------------CGGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 22149 0.68 0.614789
Target:  5'- uCACcccGGAucaggcGCUCAAacaGGUCGUGCGCu -3'
miRNA:   3'- -GUGc--CCUuu----CGAGUUg--CCGGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 15395 0.73 0.324455
Target:  5'- aGCGGGAAGacgaacGC-CGACGuuGCCGUugGCg -3'
miRNA:   3'- gUGCCCUUU------CGaGUUGC--CGGCAugCG- -5'
8083 5' -54 NC_001978.2 + 257 0.77 0.176202
Target:  5'- gACGGGGGcagcGGaCUCAGCGGCagCGUugGCg -3'
miRNA:   3'- gUGCCCUU----UC-GAGUUGCCG--GCAugCG- -5'
8083 5' -54 NC_001978.2 + 7593 1.12 0.000591
Target:  5'- gCACGGGAAAGCUCAACGGCCGUACGCg -3'
miRNA:   3'- -GUGCCCUUUCGAGUUGCCGGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 33092 0.67 0.671079
Target:  5'- uCGCGGGcuuGCUUc-CGGCCGUA-GCc -3'
miRNA:   3'- -GUGCCCuuuCGAGuuGCCGGCAUgCG- -5'
8083 5' -54 NC_001978.2 + 32283 0.66 0.693405
Target:  5'- gCGCGcuGccGCUCAGCcucaGCCGUGCGCc -3'
miRNA:   3'- -GUGCccUuuCGAGUUGc---CGGCAUGCG- -5'
8083 5' -54 NC_001978.2 + 30620 0.71 0.421781
Target:  5'- uCACGGGGAAcggacacguaccGCUCAagcacguagGCGGCUucgaugaGUGCGCc -3'
miRNA:   3'- -GUGCCCUUU------------CGAGU---------UGCCGG-------CAUGCG- -5'
8083 5' -54 NC_001978.2 + 38229 0.72 0.384973
Target:  5'- gCACGGGGAAGCcgcgccacgccuUCGggacgucaGCGGCucgcccCGUGCGCu -3'
miRNA:   3'- -GUGCCCUUUCG------------AGU--------UGCCG------GCAUGCG- -5'
8083 5' -54 NC_001978.2 + 14484 0.67 0.658729
Target:  5'- aACGGGAuuccaugAAGC-CAACGGaCGUaaaccgugcccaGCGCg -3'
miRNA:   3'- gUGCCCU-------UUCGaGUUGCCgGCA------------UGCG- -5'
8083 5' -54 NC_001978.2 + 13875 0.76 0.213537
Target:  5'- cCACGGGugcGGCUC--CGGCCGU-CGCu -3'
miRNA:   3'- -GUGCCCuu-UCGAGuuGCCGGCAuGCG- -5'
8083 5' -54 NC_001978.2 + 4996 0.81 0.099683
Target:  5'- --aGGGAccgAAGCUCAGCGGUCGcACGCu -3'
miRNA:   3'- gugCCCU---UUCGAGUUGCCGGCaUGCG- -5'
8083 5' -54 NC_001978.2 + 4188 0.67 0.626057
Target:  5'- aGCGGGGgcAGGCUCAGgcucCGGCUcuuCGCc -3'
miRNA:   3'- gUGCCCU--UUCGAGUU----GCCGGcauGCG- -5'
8083 5' -54 NC_001978.2 + 11785 0.68 0.581118
Target:  5'- cCACGGGGAAGCcgcauccgugaUCAcgauggaaggGCGaGCCGcaACGCu -3'
miRNA:   3'- -GUGCCCUUUCG-----------AGU----------UGC-CGGCa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.