Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8087 | 3' | -58.4 | NC_001978.2 | + | 669 | 0.72 | 0.200297 |
Target: 5'- cGCgggUGGCCUCAGCCucAG-CGCGCUUc -3' miRNA: 3'- -CGa--AUCGGAGUCGGccUCaGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 20566 | 0.72 | 0.189868 |
Target: 5'- cGUUggugAGCUUCAGCCccaGGUCGaCGCCCu -3' miRNA: 3'- -CGAa---UCGGAGUCGGcc-UCAGC-GCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 31612 | 0.72 | 0.211221 |
Target: 5'- ---gGGCCggacgggaAGCCGGAGUCaaGCGCCg -3' miRNA: 3'- cgaaUCGGag------UCGGCCUCAG--CGCGGg -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 32274 | 0.73 | 0.155763 |
Target: 5'- cGCUcAGCCUCAGCCGuGcgccaucccucagcGGUgcgCGCGUCCg -3' miRNA: 3'- -CGAaUCGGAGUCGGC-C--------------UCA---GCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 13808 | 0.73 | 0.161401 |
Target: 5'- --aUAGCgaCGGCCGGAGcCGCaCCCg -3' miRNA: 3'- cgaAUCGgaGUCGGCCUCaGCGcGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 26315 | 0.74 | 0.148658 |
Target: 5'- cGCUUGugcucgccgguuGCCU--GCCGGAGUCGCGCg- -3' miRNA: 3'- -CGAAU------------CGGAguCGGCCUCAGCGCGgg -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 9155 | 1.14 | 0.000144 |
Target: 5'- cGCUUAGCCUCAGCCGGAGUCGCGCCCa -3' miRNA: 3'- -CGAAUCGGAGUCGGCCUCAGCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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