Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 26191 | 0.66 | 0.487853 |
Target: 5'- aCAAGGUCGcccaggauGCG-CGC-AGCGUCggcGCCCu -3' miRNA: 3'- -GUUCCAGU--------CGCaGCGcUCGCGG---UGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 19769 | 0.66 | 0.487853 |
Target: 5'- ---cGUUGGCGUaGuCGAGCGCUucgGCCCa -3' miRNA: 3'- guucCAGUCGCAgC-GCUCGCGG---UGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 17592 | 0.66 | 0.487853 |
Target: 5'- -cGGGUCGGCGgagaCG-GaGCCGCCCg -3' miRNA: 3'- guUCCAGUCGCagc-GCuCgCGGUGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 34168 | 0.66 | 0.487853 |
Target: 5'- -uGGGcaacUgAGCGcCGuCGAGUGCgCGCCCa -3' miRNA: 3'- guUCC----AgUCGCaGC-GCUCGCG-GUGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 38157 | 0.66 | 0.477701 |
Target: 5'- gAAGG-CAGUGg-GCGAGCcagucauacGCCGCCg -3' miRNA: 3'- gUUCCaGUCGCagCGCUCG---------CGGUGGg -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 4688 | 0.66 | 0.477701 |
Target: 5'- uCAGGGUCGuCGUCGUccGCccgucGCUGCCCa -3' miRNA: 3'- -GUUCCAGUcGCAGCGcuCG-----CGGUGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 910 | 0.66 | 0.477701 |
Target: 5'- aAGGGUCAGCG-CGUcAGCGacgaaUACCa -3' miRNA: 3'- gUUCCAGUCGCaGCGcUCGCg----GUGGg -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 15932 | 0.66 | 0.477701 |
Target: 5'- aCAAGGgcgacacgGGCG-CGaCGGGCGCCgACUCg -3' miRNA: 3'- -GUUCCag------UCGCaGC-GCUCGCGG-UGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 370 | 0.66 | 0.467653 |
Target: 5'- --cGGUCcGUGUCGgGGGaguaGgCGCCCa -3' miRNA: 3'- guuCCAGuCGCAGCgCUCg---CgGUGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 22679 | 0.66 | 0.467653 |
Target: 5'- -cGGG-C-GCGUCGCuGAGUGCCGgUCa -3' miRNA: 3'- guUCCaGuCGCAGCG-CUCGCGGUgGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 37816 | 0.66 | 0.457716 |
Target: 5'- aGGGGUCGcCGUCGuCGGgcagcGCGCaauaGCCCu -3' miRNA: 3'- gUUCCAGUcGCAGC-GCU-----CGCGg---UGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 24921 | 0.66 | 0.447893 |
Target: 5'- -uGGGUCGccuuuGCGUCGCaguaGGCGCaccgguaGCCCc -3' miRNA: 3'- guUCCAGU-----CGCAGCGc---UCGCGg------UGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 33641 | 0.66 | 0.442055 |
Target: 5'- cCGGGGUCacacccgacggucacGGCGcCGacaaGGGCGaCACCCg -3' miRNA: 3'- -GUUCCAG---------------UCGCaGCg---CUCGCgGUGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 39906 | 0.66 | 0.438187 |
Target: 5'- -cGGGUC--CGUCGUacGCGCCugCCg -3' miRNA: 3'- guUCCAGucGCAGCGcuCGCGGugGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 7012 | 0.66 | 0.438187 |
Target: 5'- -uAGGUCGuCGUCuaaGCGGGUGUCACUg -3' miRNA: 3'- guUCCAGUcGCAG---CGCUCGCGGUGGg -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 34138 | 0.67 | 0.428603 |
Target: 5'- -cGGGUguGCGUcCGCcgGAGCG-UGCCCa -3' miRNA: 3'- guUCCAguCGCA-GCG--CUCGCgGUGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 22735 | 0.67 | 0.428603 |
Target: 5'- ---cGUCGGCGUCGUGuuCGUCGCUg -3' miRNA: 3'- guucCAGUCGCAGCGCucGCGGUGGg -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 16007 | 0.67 | 0.428603 |
Target: 5'- uCGA-GUCGGCGcccgUCGCGcccGUGUCGCCCu -3' miRNA: 3'- -GUUcCAGUCGC----AGCGCu--CGCGGUGGG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 22879 | 0.67 | 0.419144 |
Target: 5'- gCGGGGacggCGGCGUUGUGGccGUGCCACaugCCa -3' miRNA: 3'- -GUUCCa---GUCGCAGCGCU--CGCGGUG---GG- -5' |
|||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 27431 | 0.67 | 0.409813 |
Target: 5'- ---uGUCGGCGugaaguUCGCuGAcGCGCCugCCg -3' miRNA: 3'- guucCAGUCGC------AGCG-CU-CGCGGugGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home