miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8089 3' -58.6 NC_001978.2 + 34168 0.66 0.487853
Target:  5'- -uGGGcaacUgAGCGcCGuCGAGUGCgCGCCCa -3'
miRNA:   3'- guUCC----AgUCGCaGC-GCUCGCG-GUGGG- -5'
8089 3' -58.6 NC_001978.2 + 26191 0.66 0.487853
Target:  5'- aCAAGGUCGcccaggauGCG-CGC-AGCGUCggcGCCCu -3'
miRNA:   3'- -GUUCCAGU--------CGCaGCGcUCGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 19769 0.66 0.487853
Target:  5'- ---cGUUGGCGUaGuCGAGCGCUucgGCCCa -3'
miRNA:   3'- guucCAGUCGCAgC-GCUCGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 17592 0.66 0.487853
Target:  5'- -cGGGUCGGCGgagaCG-GaGCCGCCCg -3'
miRNA:   3'- guUCCAGUCGCagc-GCuCgCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 38157 0.66 0.477701
Target:  5'- gAAGG-CAGUGg-GCGAGCcagucauacGCCGCCg -3'
miRNA:   3'- gUUCCaGUCGCagCGCUCG---------CGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 4688 0.66 0.477701
Target:  5'- uCAGGGUCGuCGUCGUccGCccgucGCUGCCCa -3'
miRNA:   3'- -GUUCCAGUcGCAGCGcuCG-----CGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 910 0.66 0.477701
Target:  5'- aAGGGUCAGCG-CGUcAGCGacgaaUACCa -3'
miRNA:   3'- gUUCCAGUCGCaGCGcUCGCg----GUGGg -5'
8089 3' -58.6 NC_001978.2 + 15932 0.66 0.477701
Target:  5'- aCAAGGgcgacacgGGCG-CGaCGGGCGCCgACUCg -3'
miRNA:   3'- -GUUCCag------UCGCaGC-GCUCGCGG-UGGG- -5'
8089 3' -58.6 NC_001978.2 + 22679 0.66 0.467653
Target:  5'- -cGGG-C-GCGUCGCuGAGUGCCGgUCa -3'
miRNA:   3'- guUCCaGuCGCAGCG-CUCGCGGUgGG- -5'
8089 3' -58.6 NC_001978.2 + 370 0.66 0.467653
Target:  5'- --cGGUCcGUGUCGgGGGaguaGgCGCCCa -3'
miRNA:   3'- guuCCAGuCGCAGCgCUCg---CgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 37816 0.66 0.457716
Target:  5'- aGGGGUCGcCGUCGuCGGgcagcGCGCaauaGCCCu -3'
miRNA:   3'- gUUCCAGUcGCAGC-GCU-----CGCGg---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 24921 0.66 0.447893
Target:  5'- -uGGGUCGccuuuGCGUCGCaguaGGCGCaccgguaGCCCc -3'
miRNA:   3'- guUCCAGU-----CGCAGCGc---UCGCGg------UGGG- -5'
8089 3' -58.6 NC_001978.2 + 33641 0.66 0.442055
Target:  5'- cCGGGGUCacacccgacggucacGGCGcCGacaaGGGCGaCACCCg -3'
miRNA:   3'- -GUUCCAG---------------UCGCaGCg---CUCGCgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 39906 0.66 0.438187
Target:  5'- -cGGGUC--CGUCGUacGCGCCugCCg -3'
miRNA:   3'- guUCCAGucGCAGCGcuCGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 7012 0.66 0.438187
Target:  5'- -uAGGUCGuCGUCuaaGCGGGUGUCACUg -3'
miRNA:   3'- guUCCAGUcGCAG---CGCUCGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 22735 0.67 0.428603
Target:  5'- ---cGUCGGCGUCGUGuuCGUCGCUg -3'
miRNA:   3'- guucCAGUCGCAGCGCucGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 34138 0.67 0.428603
Target:  5'- -cGGGUguGCGUcCGCcgGAGCG-UGCCCa -3'
miRNA:   3'- guUCCAguCGCA-GCG--CUCGCgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 16007 0.67 0.428603
Target:  5'- uCGA-GUCGGCGcccgUCGCGcccGUGUCGCCCu -3'
miRNA:   3'- -GUUcCAGUCGC----AGCGCu--CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 22879 0.67 0.419144
Target:  5'- gCGGGGacggCGGCGUUGUGGccGUGCCACaugCCa -3'
miRNA:   3'- -GUUCCa---GUCGCAGCGCU--CGCGGUG---GG- -5'
8089 3' -58.6 NC_001978.2 + 25045 0.67 0.409813
Target:  5'- gAAGGUCAGCGcccauUCgGCaAGCGUCuucgcGCCCu -3'
miRNA:   3'- gUUCCAGUCGC-----AG-CGcUCGCGG-----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.