miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 40958 0.73 0.274007
Target:  5'- cGGGcggUCGCuucuaGCGCUGcCGCGCCCa -3'
miRNA:   3'- -UCCa--AGCGuuag-UGCGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 39982 0.66 0.649151
Target:  5'- uGGUUCccCGAagACGCCGaCGCugACCCg -3'
miRNA:   3'- uCCAAGc-GUUagUGCGGCaGCG--UGGG- -5'
8093 3' -55.1 NC_001978.2 + 38965 0.67 0.615627
Target:  5'- aAGG--CGCcuUCcCGCCGaCGUACCCg -3'
miRNA:   3'- -UCCaaGCGuuAGuGCGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 37324 0.69 0.481061
Target:  5'- uAGcUUCGCGAgcaccugacggaGCGCCGUC-CGCCCg -3'
miRNA:   3'- -UCcAAGCGUUag----------UGCGGCAGcGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 36891 0.68 0.549225
Target:  5'- gAGG-UCGCugcCGCuGCCgGUCGgCACCCu -3'
miRNA:   3'- -UCCaAGCGuuaGUG-CGG-CAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 36324 0.77 0.160026
Target:  5'- cGGGUUCGCAcaauCGCCuUCGUGCCCa -3'
miRNA:   3'- -UCCAAGCGUuaguGCGGcAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34637 0.7 0.415364
Target:  5'- cGGGUUCGagccgACGCCGacugagccccgUUGCACCCg -3'
miRNA:   3'- -UCCAAGCguuagUGCGGC-----------AGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34166 0.66 0.671437
Target:  5'- -cGUggGCAAcugaGCGCCGUCgagugcGCGCCCa -3'
miRNA:   3'- ucCAagCGUUag--UGCGGCAG------CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34138 0.7 0.4347
Target:  5'- cGGGUgUGC-GUC-CGCCGgagCGUGCCCa -3'
miRNA:   3'- -UCCAaGCGuUAGuGCGGCa--GCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34103 0.66 0.637978
Target:  5'- uGGGaaCGCGuacaGUcCGCGCgaGUCGCcACCCa -3'
miRNA:   3'- -UCCaaGCGU----UA-GUGCGg-CAGCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 33185 0.76 0.178745
Target:  5'- cGGGUgcUCGaccaccuUCACGCCGUaGCGCCCa -3'
miRNA:   3'- -UCCA--AGCguu----AGUGCGGCAgCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 31005 0.7 0.405896
Target:  5'- aGGcGUUCGCuaa-GCGCUauGUCGCugCCg -3'
miRNA:   3'- -UC-CAAGCGuuagUGCGG--CAGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 30995 0.69 0.495646
Target:  5'- uGGG--CGCA--CAUGCCuuccauGUCGCACCCg -3'
miRNA:   3'- -UCCaaGCGUuaGUGCGG------CAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 30929 0.67 0.593335
Target:  5'- aAGGagUGCuugagaauGUCGCGCUgaGUgGCGCCCa -3'
miRNA:   3'- -UCCaaGCGu-------UAGUGCGG--CAgCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 29426 0.69 0.495646
Target:  5'- gGGGgUCGCuguAUgGCGCCGaCGUgugACCCu -3'
miRNA:   3'- -UCCaAGCGu--UAgUGCGGCaGCG---UGGG- -5'
8093 3' -55.1 NC_001978.2 + 27500 0.66 0.671437
Target:  5'- cAGGcgcgUCaGCGAacuUCACGCCGacaagCGCaauACCCg -3'
miRNA:   3'- -UCCa---AG-CGUU---AGUGCGGCa----GCG---UGGG- -5'
8093 3' -55.1 NC_001978.2 + 26832 0.67 0.601125
Target:  5'- uGGUUCGCGccucGUCAUGgCGUCcgaaggcgagucggGCaaGCCCa -3'
miRNA:   3'- uCCAAGCGU----UAGUGCgGCAG--------------CG--UGGG- -5'
8093 3' -55.1 NC_001978.2 + 26189 0.67 0.582235
Target:  5'- aAGG-UCGCccagGAUgCGCGCagCGUCGgCGCCCu -3'
miRNA:   3'- -UCCaAGCG----UUA-GUGCG--GCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 26021 0.76 0.18372
Target:  5'- cGGG-UCGCGcUCACGCCagucaguaagGUCGuCACCCg -3'
miRNA:   3'- -UCCaAGCGUuAGUGCGG----------CAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 25637 0.72 0.316665
Target:  5'- cAGGUcaCGCcccugggcgccacgGGUCACGCCGUCGaauCCCu -3'
miRNA:   3'- -UCCAa-GCG--------------UUAGUGCGGCAGCgu-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.