miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 23582 0.66 0.671437
Target:  5'- cGGGUUCGg---CGCGUCGUacuccuucgcCGCugCCu -3'
miRNA:   3'- -UCCAAGCguuaGUGCGGCA----------GCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 5285 0.7 0.4347
Target:  5'- cGGGUUaccgGCcuUCGUGCCGUCGCGCUUc -3'
miRNA:   3'- -UCCAAg---CGuuAGUGCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 6736 0.71 0.387373
Target:  5'- uGGUUgGCu-UCGCGCCGgagCGCAUagCCa -3'
miRNA:   3'- uCCAAgCGuuAGUGCGGCa--GCGUG--GG- -5'
8093 3' -55.1 NC_001978.2 + 12962 1.13 0.000438
Target:  5'- cAGGUUCGCAAUCACGCCGUCGCACCCg -3'
miRNA:   3'- -UCCAAGCGUUAGUGCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 17914 0.66 0.637978
Target:  5'- --cUUCGCccggCACGCCGUCaGCGUCCu -3'
miRNA:   3'- uccAAGCGuua-GUGCGGCAG-CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 9878 0.66 0.6268
Target:  5'- --cUUCGC---CGCGCCGUCGaccuuGCCCa -3'
miRNA:   3'- uccAAGCGuuaGUGCGGCAGCg----UGGG- -5'
8093 3' -55.1 NC_001978.2 + 38965 0.67 0.615627
Target:  5'- aAGG--CGCcuUCcCGCCGaCGUACCCg -3'
miRNA:   3'- -UCCaaGCGuuAGuGCGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 30929 0.67 0.593335
Target:  5'- aAGGagUGCuugagaauGUCGCGCUgaGUgGCGCCCa -3'
miRNA:   3'- -UCCaaGCGu-------UAGUGCGG--CAgCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 10219 0.68 0.516819
Target:  5'- aGGGcUUGCuucguggauucGAUUAcCGCCGUCGCGCUUg -3'
miRNA:   3'- -UCCaAGCG-----------UUAGU-GCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 5393 0.7 0.4347
Target:  5'- cGGGUUCGC-GUCggACGUCGUgaaggucgaCGCGCCa -3'
miRNA:   3'- -UCCAAGCGuUAG--UGCGGCA---------GCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 17515 0.68 0.506185
Target:  5'- ----gCGCAGauaCACGCCGUCGC-CCUc -3'
miRNA:   3'- uccaaGCGUUa--GUGCGGCAGCGuGGG- -5'
8093 3' -55.1 NC_001978.2 + 11122 0.68 0.523242
Target:  5'- uAGGUagGaaccgGAUCACGCCGgagacguccgcaGCGCCCa -3'
miRNA:   3'- -UCCAagCg----UUAGUGCGGCag----------CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 27500 0.66 0.671437
Target:  5'- cAGGcgcgUCaGCGAacuUCACGCCGacaagCGCaauACCCg -3'
miRNA:   3'- -UCCa---AG-CGUU---AGUGCGGCa----GCG---UGGG- -5'
8093 3' -55.1 NC_001978.2 + 30995 0.69 0.495646
Target:  5'- uGGG--CGCA--CAUGCCuuccauGUCGCACCCg -3'
miRNA:   3'- -UCCaaGCGUuaGUGCGG------CAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 8342 0.66 0.649151
Target:  5'- cGGUUCGCAGagAUGuuG-CGCuuCCg -3'
miRNA:   3'- uCCAAGCGUUagUGCggCaGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 26189 0.67 0.582235
Target:  5'- aAGG-UCGCccagGAUgCGCGCagCGUCGgCGCCCu -3'
miRNA:   3'- -UCCaAGCG----UUA-GUGCG--GCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 37324 0.69 0.481061
Target:  5'- uAGcUUCGCGAgcaccugacggaGCGCCGUC-CGCCCg -3'
miRNA:   3'- -UCcAAGCGUUag----------UGCGGCAGcGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 13243 0.7 0.424
Target:  5'- cGGGUUCGCcGUCGCggagcaccacaagGCCGgaaCGCCCa -3'
miRNA:   3'- -UCCAAGCGuUAGUG-------------CGGCagcGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34103 0.66 0.637978
Target:  5'- uGGGaaCGCGuacaGUcCGCGCgaGUCGCcACCCa -3'
miRNA:   3'- -UCCaaGCGU----UA-GUGCGg-CAGCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 23846 0.66 0.6268
Target:  5'- ---gUCgGCAAUCGCGUCGUUGUACg- -3'
miRNA:   3'- uccaAG-CGUUAGUGCGGCAGCGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.