miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 16693 0.66 0.659999
Target:  5'- uGCGGucaACGcauGUCGGCGCCGuuCCGc -3'
miRNA:   3'- gCGCU---UGCcu-CAGCUGCGGCuuGGCc -5'
8094 3' -56.4 NC_001978.2 + 4494 0.66 0.649157
Target:  5'- aGgGAACGcGuGUCGugGuuGAACgUGGc -3'
miRNA:   3'- gCgCUUGC-CuCAGCugCggCUUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 27940 0.66 0.649157
Target:  5'- aGuCGAACGGGgcGUUGugGaucagGAACCGGg -3'
miRNA:   3'- gC-GCUUGCCU--CAGCugCgg---CUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 21778 0.66 0.648071
Target:  5'- gGUG-ACGuAGUgaugaagUGGCGUCGAGCCGGg -3'
miRNA:   3'- gCGCuUGCcUCA-------GCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 33933 0.66 0.638299
Target:  5'- gGCGAccgGCGaaGAGaucaCGGCGCUucuGAACCGGg -3'
miRNA:   3'- gCGCU---UGC--CUCa---GCUGCGG---CUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 7976 0.66 0.638299
Target:  5'- aCGUGAgcuugauuGCGGGcGUC-ACGCCGucgcCCGGg -3'
miRNA:   3'- -GCGCU--------UGCCU-CAGcUGCGGCuu--GGCC- -5'
8094 3' -56.4 NC_001978.2 + 12636 0.66 0.638299
Target:  5'- uCGUGAAccaaucgcCGGAGUCGA-GCCGcACCc- -3'
miRNA:   3'- -GCGCUU--------GCCUCAGCUgCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 30042 0.66 0.631782
Target:  5'- uCGCGcucAGCGGcaagccggucggcaaGGUCGuCGgCGGACUGGg -3'
miRNA:   3'- -GCGC---UUGCC---------------UCAGCuGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 5497 0.66 0.627437
Target:  5'- cCGCccaugGAACGcuGAGUCGugGCCGggUagcucucaGGa -3'
miRNA:   3'- -GCG-----CUUGC--CUCAGCugCGGCuuGg-------CC- -5'
8094 3' -56.4 NC_001978.2 + 39403 0.66 0.627437
Target:  5'- gCGUGAuCGG-GUCG-CGCUGAAUgCGGu -3'
miRNA:   3'- -GCGCUuGCCuCAGCuGCGGCUUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 28947 0.66 0.627437
Target:  5'- gCGCGAcCGGAagguGUUcaagGGCGCCGGAuUCGGc -3'
miRNA:   3'- -GCGCUuGCCU----CAG----CUGCGGCUU-GGCC- -5'
8094 3' -56.4 NC_001978.2 + 20387 0.66 0.627437
Target:  5'- gGCGAAgGccgaagucGAGUCG-CGCCGGucgGCCGa -3'
miRNA:   3'- gCGCUUgC--------CUCAGCuGCGGCU---UGGCc -5'
8094 3' -56.4 NC_001978.2 + 1105 0.66 0.627437
Target:  5'- aCGCGGACGuAGugaaggccguUCGucuUGCCGAaguACCGGg -3'
miRNA:   3'- -GCGCUUGCcUC----------AGCu--GCGGCU---UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 38027 0.66 0.627437
Target:  5'- gCGCGcugccccaGGAcGaCGACGgCGAGCCGGu -3'
miRNA:   3'- -GCGCuug-----CCU-CaGCUGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 28039 0.66 0.627437
Target:  5'- uGCGuucuACGucGAcccGUCGGCGCCGGACacucaGGg -3'
miRNA:   3'- gCGCu---UGC--CU---CAGCUGCGGCUUGg----CC- -5'
8094 3' -56.4 NC_001978.2 + 25664 0.66 0.627437
Target:  5'- gGCGuguucCGGGGU-GACGCCGGuuaCGGc -3'
miRNA:   3'- gCGCuu---GCCUCAgCUGCGGCUug-GCC- -5'
8094 3' -56.4 NC_001978.2 + 3120 0.66 0.616578
Target:  5'- uCGCGuaaGGAGauagUGACGCCGGAauGGc -3'
miRNA:   3'- -GCGCuugCCUCa---GCUGCGGCUUggCC- -5'
8094 3' -56.4 NC_001978.2 + 13947 0.66 0.616578
Target:  5'- uCGUGAuuACGGAGcgcUCGACGUCGuugaugagaacGGCaCGGa -3'
miRNA:   3'- -GCGCU--UGCCUC---AGCUGCGGC-----------UUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 34713 0.66 0.613323
Target:  5'- gGUGcAACGGggcucAGUCGGCGUCGGcucgaacccggcaaGCUGGg -3'
miRNA:   3'- gCGC-UUGCC-----UCAGCUGCGGCU--------------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 5999 0.67 0.605733
Target:  5'- gCGCGccGACGGucuucuuGUCGACGCCcgGGGCgCGa -3'
miRNA:   3'- -GCGC--UUGCCu------CAGCUGCGG--CUUG-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.