miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 4494 0.66 0.649157
Target:  5'- aGgGAACGcGuGUCGugGuuGAACgUGGc -3'
miRNA:   3'- gCgCUUGC-CuCAGCugCggCUUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 20759 0.69 0.479531
Target:  5'- gCGCGAACgagGGAGUUGuGCGCCcccuGCCGc -3'
miRNA:   3'- -GCGCUUG---CCUCAGC-UGCGGcu--UGGCc -5'
8094 3' -56.4 NC_001978.2 + 31605 0.69 0.45967
Target:  5'- aCGgGAAgcCGGAGUCaaGCGCCGuGCCGu -3'
miRNA:   3'- -GCgCUU--GCCUCAGc-UGCGGCuUGGCc -5'
8094 3' -56.4 NC_001978.2 + 13638 1.11 0.000546
Target:  5'- gCGCGAACGGAGUCGACGCCGAACCGGg -3'
miRNA:   3'- -GCGCUUGCCUCAGCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 12636 0.66 0.638299
Target:  5'- uCGUGAAccaaucgcCGGAGUCGA-GCCGcACCc- -3'
miRNA:   3'- -GCGCUU--------GCCUCAGCUgCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 30042 0.66 0.631782
Target:  5'- uCGCGcucAGCGGcaagccggucggcaaGGUCGuCGgCGGACUGGg -3'
miRNA:   3'- -GCGC---UUGCC---------------UCAGCuGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 39403 0.66 0.627437
Target:  5'- gCGUGAuCGG-GUCG-CGCUGAAUgCGGu -3'
miRNA:   3'- -GCGCUuGCCuCAGCuGCGGCUUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 34713 0.66 0.613323
Target:  5'- gGUGcAACGGggcucAGUCGGCGUCGGcucgaacccggcaaGCUGGg -3'
miRNA:   3'- gCGC-UUGCC-----UCAGCUGCGGCU--------------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 9144 0.67 0.573363
Target:  5'- aGC---CGGAGUCG-CGCCcAACUGGg -3'
miRNA:   3'- gCGcuuGCCUCAGCuGCGGcUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 18532 0.68 0.499803
Target:  5'- cCGUGAAgGGAGUCGGCaacCUGAGCgGc -3'
miRNA:   3'- -GCGCUUgCCUCAGCUGc--GGCUUGgCc -5'
8094 3' -56.4 NC_001978.2 + 39638 0.68 0.541414
Target:  5'- uGCGGACGG-GUCGACcaCCuu-CCGGc -3'
miRNA:   3'- gCGCUUGCCuCAGCUGc-GGcuuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 1007 0.67 0.584117
Target:  5'- gCGCGAcgaagccgcCGGAGUCGACaaGCCGGuugagggccuUCGGg -3'
miRNA:   3'- -GCGCUu--------GCCUCAGCUG--CGGCUu---------GGCC- -5'
8094 3' -56.4 NC_001978.2 + 27940 0.66 0.649157
Target:  5'- aGuCGAACGGGgcGUUGugGaucagGAACCGGg -3'
miRNA:   3'- gC-GCUUGCCU--CAGCugCgg---CUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 5615 0.68 0.510081
Target:  5'- gGCGAcccAUGGcGUcacCGAUgGCCGGACCGGc -3'
miRNA:   3'- gCGCU---UGCCuCA---GCUG-CGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 21778 0.66 0.648071
Target:  5'- gGUG-ACGuAGUgaugaagUGGCGUCGAGCCGGg -3'
miRNA:   3'- gCGCuUGCcUCA-------GCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 19596 0.67 0.594909
Target:  5'- gGCGuGAUGuGGUCGGCGCCGGucagcuCCGu -3'
miRNA:   3'- gCGC-UUGCcUCAGCUGCGGCUu-----GGCc -5'
8094 3' -56.4 NC_001978.2 + 3071 0.68 0.510081
Target:  5'- gCGCGucauGCGGAGUgacCGucuCGCCGGaaGCCGc -3'
miRNA:   3'- -GCGCu---UGCCUCA---GCu--GCGGCU--UGGCc -5'
8094 3' -56.4 NC_001978.2 + 35845 0.69 0.466573
Target:  5'- aGUGAGCGGAcccuucgaaccggcGggaGugGUCGAGCUGGg -3'
miRNA:   3'- gCGCUUGCCU--------------Cag-CugCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 7976 0.66 0.638299
Target:  5'- aCGUGAgcuugauuGCGGGcGUC-ACGCCGucgcCCGGg -3'
miRNA:   3'- -GCGCU--------UGCCU-CAGcUGCGGCuu--GGCC- -5'
8094 3' -56.4 NC_001978.2 + 5497 0.66 0.627437
Target:  5'- cCGCccaugGAACGcuGAGUCGugGCCGggUagcucucaGGa -3'
miRNA:   3'- -GCG-----CUUGC--CUCAGCugCGGCuuGg-------CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.