miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 17860 0.69 0.449905
Target:  5'- aCGCGGcauaguUGGucguGUCGGCGUCGGACCa- -3'
miRNA:   3'- -GCGCUu-----GCCu---CAGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 8601 0.72 0.311074
Target:  5'- gCGCGAAgcauCGGGGcaCGGCG-CGAACCGGc -3'
miRNA:   3'- -GCGCUU----GCCUCa-GCUGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 31605 0.69 0.45967
Target:  5'- aCGgGAAgcCGGAGUCaaGCGCCGuGCCGu -3'
miRNA:   3'- -GCgCUU--GCCUCAGc-UGCGGCuUGGCc -5'
8094 3' -56.4 NC_001978.2 + 19596 0.67 0.594909
Target:  5'- gGCGuGAUGuGGUCGGCGCCGGucagcuCCGu -3'
miRNA:   3'- gCGC-UUGCcUCAGCUGCGGCUu-----GGCc -5'
8094 3' -56.4 NC_001978.2 + 41350 0.71 0.342519
Target:  5'- uGCaAGCGGcuugauguGGUCGACGUCGAGCUGu -3'
miRNA:   3'- gCGcUUGCC--------UCAGCUGCGGCUUGGCc -5'
8094 3' -56.4 NC_001978.2 + 3695 0.7 0.412031
Target:  5'- aCGCGGugcGCGuuGUCGACGCCGGAguuagCGGc -3'
miRNA:   3'- -GCGCU---UGCcuCAGCUGCGGCUUg----GCC- -5'
8094 3' -56.4 NC_001978.2 + 21553 0.72 0.303564
Target:  5'- aCGUcGGCGGAGUCGA-GCCcccACCGGg -3'
miRNA:   3'- -GCGcUUGCCUCAGCUgCGGcu-UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 12457 0.73 0.274921
Target:  5'- gCGUGAACGuGGUCGACGCCu--UCGGc -3'
miRNA:   3'- -GCGCUUGCcUCAGCUGCGGcuuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 34713 0.66 0.613323
Target:  5'- gGUGcAACGGggcucAGUCGGCGUCGGcucgaacccggcaaGCUGGg -3'
miRNA:   3'- gCGC-UUGCC-----UCAGCUGCGGCU--------------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 39403 0.66 0.627437
Target:  5'- gCGUGAuCGG-GUCG-CGCUGAAUgCGGu -3'
miRNA:   3'- -GCGCUuGCCuCAGCuGCGGCUUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 9144 0.67 0.573363
Target:  5'- aGC---CGGAGUCG-CGCCcAACUGGg -3'
miRNA:   3'- gCGcuuGCCUCAGCuGCGGcUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 5615 0.68 0.510081
Target:  5'- gGCGAcccAUGGcGUcacCGAUgGCCGGACCGGc -3'
miRNA:   3'- gCGCU---UGCCuCA---GCUG-CGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 1007 0.67 0.584117
Target:  5'- gCGCGAcgaagccgcCGGAGUCGACaaGCCGGuugagggccuUCGGg -3'
miRNA:   3'- -GCGCUu--------GCCUCAGCUG--CGGCUu---------GGCC- -5'
8094 3' -56.4 NC_001978.2 + 24817 0.73 0.268107
Target:  5'- uCGCGAACaGAGaucaugCGGCGCUGGggcuACCGGu -3'
miRNA:   3'- -GCGCUUGcCUCa-----GCUGCGGCU----UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 1105 0.66 0.627437
Target:  5'- aCGCGGACGuAGugaaggccguUCGucuUGCCGAaguACCGGg -3'
miRNA:   3'- -GCGCUUGCcUC----------AGCu--GCGGCU---UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 38027 0.66 0.627437
Target:  5'- gCGCGcugccccaGGAcGaCGACGgCGAGCCGGu -3'
miRNA:   3'- -GCGCuug-----CCU-CaGCUGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 28039 0.66 0.627437
Target:  5'- uGCGuucuACGucGAcccGUCGGCGCCGGACacucaGGg -3'
miRNA:   3'- gCGCu---UGC--CU---CAGCUGCGGCUUGg----CC- -5'
8094 3' -56.4 NC_001978.2 + 25664 0.66 0.627437
Target:  5'- gGCGuguucCGGGGU-GACGCCGGuuaCGGc -3'
miRNA:   3'- gCGCuu---GCCUCAgCUGCGGCUug-GCC- -5'
8094 3' -56.4 NC_001978.2 + 33554 0.69 0.469547
Target:  5'- uGCGggUGucgcccuuGUCGGCGCCGuGACCGu -3'
miRNA:   3'- gCGCuuGCcu------CAGCUGCGGC-UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 27174 0.69 0.479531
Target:  5'- gGCGAccCGGAGUCGAuuagcaccgcaaCGCgUGAguACCGGg -3'
miRNA:   3'- gCGCUu-GCCUCAGCU------------GCG-GCU--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.