miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8097 3' -57.1 NC_001978.2 + 1056 0.66 0.551831
Target:  5'- gGGUcGUCGCccccGCCGAgacuccCGCCGAgaagcgcGACCGCa -3'
miRNA:   3'- -UCA-CGGCG----CGGUU------GCGGUUa------CUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 9090 0.66 0.551831
Target:  5'- aAGcGCCucaGCGauaCCGGCGCCAAUG-CCGa -3'
miRNA:   3'- -UCaCGG---CGC---GGUUGCGGUUACuGGCg -5'
8097 3' -57.1 NC_001978.2 + 29045 0.66 0.540989
Target:  5'- -uUGcCCGUGCgGuCGCCGAguaUGACCGg -3'
miRNA:   3'- ucAC-GGCGCGgUuGCGGUU---ACUGGCg -5'
8097 3' -57.1 NC_001978.2 + 11518 0.66 0.530219
Target:  5'- --aGCgGCGCCGAcCGCUugcGUGcCCGUg -3'
miRNA:   3'- ucaCGgCGCGGUU-GCGGu--UACuGGCG- -5'
8097 3' -57.1 NC_001978.2 + 15832 0.66 0.519529
Target:  5'- --cGCUGCGCCAcgaACGCCGu---CCGa -3'
miRNA:   3'- ucaCGGCGCGGU---UGCGGUuacuGGCg -5'
8097 3' -57.1 NC_001978.2 + 22886 0.66 0.519529
Target:  5'- ---cUCGCGCUcaucguGACGCCcGUGACgCGCg -3'
miRNA:   3'- ucacGGCGCGG------UUGCGGuUACUG-GCG- -5'
8097 3' -57.1 NC_001978.2 + 9292 0.66 0.519529
Target:  5'- --aGuuGgGCCGACGUCGAauGCCGUu -3'
miRNA:   3'- ucaCggCgCGGUUGCGGUUacUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 29171 0.66 0.519529
Target:  5'- cGUGCCGCgcgcuucacgcuGCCAACGCgaCGAcGcCCGUu -3'
miRNA:   3'- uCACGGCG------------CGGUUGCG--GUUaCuGGCG- -5'
8097 3' -57.1 NC_001978.2 + 18817 0.66 0.518464
Target:  5'- gGGUGCgCGCGgcguuccccgcuaUCGACGCUGcgGAgCGCc -3'
miRNA:   3'- -UCACG-GCGC-------------GGUUGCGGUuaCUgGCG- -5'
8097 3' -57.1 NC_001978.2 + 8542 0.66 0.508924
Target:  5'- cGUGCCccgaugcuucGCGCCAugGCguAUG-UCGUc -3'
miRNA:   3'- uCACGG----------CGCGGUugCGguUACuGGCG- -5'
8097 3' -57.1 NC_001978.2 + 33727 0.67 0.487997
Target:  5'- cAGUGCCGUaaucaucgaucuGCCGuCGUCGGgucgcucGACCGUg -3'
miRNA:   3'- -UCACGGCG------------CGGUuGCGGUUa------CUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 22863 0.67 0.487997
Target:  5'- uGUgGCCGUGCCAcAUGCCAAUcagGAUCa- -3'
miRNA:   3'- uCA-CGGCGCGGU-UGCGGUUA---CUGGcg -5'
8097 3' -57.1 NC_001978.2 + 38678 0.67 0.487997
Target:  5'- cGUGUCGCGCUucucGCGCCugaaggucAUGGaCGCg -3'
miRNA:   3'- uCACGGCGCGGu---UGCGGu-------UACUgGCG- -5'
8097 3' -57.1 NC_001978.2 + 30401 0.67 0.487997
Target:  5'- gGGUGCCGUGUCGcucgacaaggucACGUCGGcUGAgaaCGCg -3'
miRNA:   3'- -UCACGGCGCGGU------------UGCGGUU-ACUg--GCG- -5'
8097 3' -57.1 NC_001978.2 + 19702 0.67 0.486961
Target:  5'- uGG-GCCGaagcgcucgacuaCGCCAACGCgAA-GACUGCc -3'
miRNA:   3'- -UCaCGGC-------------GCGGUUGCGgUUaCUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 12192 0.67 0.477686
Target:  5'- cGUGCCGgaGCCGAcCGCaaccGugCGCg -3'
miRNA:   3'- uCACGGCg-CGGUU-GCGguuaCugGCG- -5'
8097 3' -57.1 NC_001978.2 + 32301 0.67 0.477686
Target:  5'- --cGCCGUGCCuacugagccgaaGGCGCCAcgcaaGACgGCg -3'
miRNA:   3'- ucaCGGCGCGG------------UUGCGGUua---CUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 10259 0.67 0.471552
Target:  5'- gGGUGCUuauggGCGCUcaguccaugauucagGGCGCCcgAAUGGCgGCg -3'
miRNA:   3'- -UCACGG-----CGCGG---------------UUGCGG--UUACUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 12756 0.67 0.467484
Target:  5'- uGGUGUaCGUGgCGACGCUGccGACCGg -3'
miRNA:   3'- -UCACG-GCGCgGUUGCGGUuaCUGGCg -5'
8097 3' -57.1 NC_001978.2 + 16768 0.67 0.46647
Target:  5'- uGG-GCaGCGgaaCGGCGCCGAcaugcguUGACCGCa -3'
miRNA:   3'- -UCaCGgCGCg--GUUGCGGUU-------ACUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.