miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 3105 0.66 0.571004
Target:  5'- aGCCGGAccGAcgcgaacacugccgACACCUGaAGCGCgucaugcggagUGACCGu -3'
miRNA:   3'- -CGGCUU--CU--------------UGUGGAC-UCGCG-----------GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 869 0.76 0.163423
Target:  5'- gGUCGAGugcuccGGCGCCUGGGCGCgCGACUGg -3'
miRNA:   3'- -CGGCUUc-----UUGUGGACUCGCG-GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 38129 0.71 0.323188
Target:  5'- cGCCGAccgcGAACGCCauucGAGCGUC-ACCGg -3'
miRNA:   3'- -CGGCUu---CUUGUGGa---CUCGCGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 26372 0.66 0.574285
Target:  5'- aCCGgcGAGCACa--AGCGCCGcGCCc -3'
miRNA:   3'- cGGCuuCUUGUGgacUCGCGGC-UGGc -5'
8100 3' -56.2 NC_001978.2 + 33642 0.66 0.618364
Target:  5'- cCCGggGucACACCcGAcggucacgGCGCCGACa- -3'
miRNA:   3'- cGGCuuCu-UGUGGaCU--------CGCGGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 14237 0.66 0.629437
Target:  5'- uGCCGGAcaccaugccGCGCCcGAuaGCCGACCa -3'
miRNA:   3'- -CGGCUUcu-------UGUGGaCUcgCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 18845 0.75 0.187327
Target:  5'- cGCUGcGGAGCGCCUGAGC-CUGcCCGu -3'
miRNA:   3'- -CGGCuUCUUGUGGACUCGcGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 28216 0.78 0.11047
Target:  5'- cGCCGAAcacGcGCGCCUGAGCauCCGGCCGa -3'
miRNA:   3'- -CGGCUU---CuUGUGGACUCGc-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 35978 0.68 0.46845
Target:  5'- aGCCuGggGcGACACCccgGAGacugcCGCCGACCc -3'
miRNA:   3'- -CGG-CuuC-UUGUGGa--CUC-----GCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 37286 0.68 0.462401
Target:  5'- aGCCGAAG-GCAuCCUugaaguccaucaacgGAGUGCCuACCGg -3'
miRNA:   3'- -CGGCUUCuUGU-GGA---------------CUCGCGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 25861 0.71 0.304517
Target:  5'- gGCCGGAGucggcuucacgcuGCGCCUGAGCGaaGggcuuGCCGg -3'
miRNA:   3'- -CGGCUUCu------------UGUGGACUCGCggC-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 30125 0.72 0.29998
Target:  5'- gGCCGuguGGGACuGCCUGaAGCGCuucacggacaCGACCGu -3'
miRNA:   3'- -CGGCu--UCUUG-UGGAC-UCGCG----------GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 34150 0.72 0.29998
Target:  5'- cGCCGGAGcgugcccacgugGGCAaCUGAGCGCCG-UCGa -3'
miRNA:   3'- -CGGCUUC------------UUGUgGACUCGCGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 24969 0.72 0.284515
Target:  5'- gGCgCGAAG-ACGCUugccgaaUGGGCGCUGACCu -3'
miRNA:   3'- -CG-GCUUCuUGUGG-------ACUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 33847 0.75 0.172637
Target:  5'- gGCCGAcGGcguUACCcGGGUGCCGACCGu -3'
miRNA:   3'- -CGGCUuCUu--GUGGaCUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 7345 0.69 0.409927
Target:  5'- gGCuCGAAGGucgccuucaaGCACCUGGguuGCGUggCGACCGa -3'
miRNA:   3'- -CG-GCUUCU----------UGUGGACU---CGCG--GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 26067 0.69 0.409927
Target:  5'- gGCCGAAGucgcGCACCguaccGGCGCCGuuCa -3'
miRNA:   3'- -CGGCUUCu---UGUGGac---UCGCGGCugGc -5'
8100 3' -56.2 NC_001978.2 + 36775 0.69 0.428934
Target:  5'- aGCCGAcgccGGA--GCCUGAGCcggaGCCuGCCGa -3'
miRNA:   3'- -CGGCU----UCUugUGGACUCG----CGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 25625 0.69 0.448451
Target:  5'- aGCCuGAAGAACccggacgggcaGCgCUGGGCGCCGuauggcguguuCCGg -3'
miRNA:   3'- -CGG-CUUCUUG-----------UG-GACUCGCGGCu----------GGC- -5'
8100 3' -56.2 NC_001978.2 + 23115 0.68 0.458392
Target:  5'- aGCCGAAGAA-GCgUGAGacguaCGCCGACg- -3'
miRNA:   3'- -CGGCUUCUUgUGgACUC-----GCGGCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.