miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 3' -52.3 NC_001978.2 + 32433 0.66 0.819027
Target:  5'- cGCCcuuccauGCGUCGAGCcGUUCGGCGgacGCUu -3'
miRNA:   3'- -UGG-------UGUAGCUUGcUAGGCCGUau-CGG- -5'
8111 3' -52.3 NC_001978.2 + 5572 0.66 0.810299
Target:  5'- cGCCACuUCcuGACGGguaCCGGCAcgGGUCa -3'
miRNA:   3'- -UGGUGuAGc-UUGCUa--GGCCGUa-UCGG- -5'
8111 3' -52.3 NC_001978.2 + 6743 0.66 0.810299
Target:  5'- gUCACGUUGGuuggcuuCGcgCCGgagcGCAUAGCCa -3'
miRNA:   3'- uGGUGUAGCUu------GCuaGGC----CGUAUCGG- -5'
8111 3' -52.3 NC_001978.2 + 40127 0.66 0.80041
Target:  5'- cGCC-CAUCGAGaagcgcgcuuCGAUCacgugGGCGaAGCCg -3'
miRNA:   3'- -UGGuGUAGCUU----------GCUAGg----CCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 22780 0.66 0.80041
Target:  5'- uGCCuuCGUCGucAUGAUCCugauuggcauguGGCAcGGCCa -3'
miRNA:   3'- -UGGu-GUAGCu-UGCUAGG------------CCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 33460 0.66 0.80041
Target:  5'- aGCCGCAUacaCGAACaGAUCaaggaaGCAUGGCg -3'
miRNA:   3'- -UGGUGUA---GCUUG-CUAGgc----CGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 3603 0.66 0.80041
Target:  5'- aACCACA----GCGc-CCGGCAUGGCg -3'
miRNA:   3'- -UGGUGUagcuUGCuaGGCCGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 22141 0.66 0.790332
Target:  5'- cCUACGUCGAGCacuUCCGGgAguuccugaaGGCCg -3'
miRNA:   3'- uGGUGUAGCUUGcu-AGGCCgUa--------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 5367 0.66 0.790332
Target:  5'- gAUCACggGUCGGGCGAccgCCGGgAUugucggcgagacGGCCg -3'
miRNA:   3'- -UGGUG--UAGCUUGCUa--GGCCgUA------------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 33138 0.66 0.790332
Target:  5'- aACCAUGUCGAcCGG-CgCGGCGUugGGCa -3'
miRNA:   3'- -UGGUGUAGCUuGCUaG-GCCGUA--UCGg -5'
8111 3' -52.3 NC_001978.2 + 36463 0.66 0.790332
Target:  5'- cGCCGCAUC-AACGAUcaagcCCaGCAcccAGCCg -3'
miRNA:   3'- -UGGUGUAGcUUGCUA-----GGcCGUa--UCGG- -5'
8111 3' -52.3 NC_001978.2 + 39096 0.66 0.789314
Target:  5'- gAUUACGUCGGGCucgaacucgaagGGUCCGGUaaggggaGUGGUCg -3'
miRNA:   3'- -UGGUGUAGCUUG------------CUAGGCCG-------UAUCGG- -5'
8111 3' -52.3 NC_001978.2 + 11036 0.66 0.780076
Target:  5'- cGCCugGgcgcugCGGACGucUCCGGCGUGauCCg -3'
miRNA:   3'- -UGGugUa-----GCUUGCu-AGGCCGUAUc-GG- -5'
8111 3' -52.3 NC_001978.2 + 10283 0.67 0.769655
Target:  5'- cGCCGCGUUGA---GUCCGGCcugaacGCCc -3'
miRNA:   3'- -UGGUGUAGCUugcUAGGCCGuau---CGG- -5'
8111 3' -52.3 NC_001978.2 + 6354 0.67 0.769655
Target:  5'- cACCAC--CGAAuCGuuUCCGGCGUcgggucuucGGCCg -3'
miRNA:   3'- -UGGUGuaGCUU-GCu-AGGCCGUA---------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 32509 0.67 0.768604
Target:  5'- aGCCACugggCGAGCGAcagaacgUCguaaGGCGUaAGCCc -3'
miRNA:   3'- -UGGUGua--GCUUGCU-------AGg---CCGUA-UCGG- -5'
8111 3' -52.3 NC_001978.2 + 23778 0.67 0.759081
Target:  5'- uCCGCAUCGGgccACGcUUCGGCGUguacuccacaAGCUc -3'
miRNA:   3'- uGGUGUAGCU---UGCuAGGCCGUA----------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 12328 0.67 0.748367
Target:  5'- uGCCGCuUCGccGACGGUCCcGaCAcGGCCg -3'
miRNA:   3'- -UGGUGuAGC--UUGCUAGGcC-GUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 9076 0.67 0.748367
Target:  5'- uGCCGCccaGUUGGGCGcgacUCCGGCugaGGCUa -3'
miRNA:   3'- -UGGUG---UAGCUUGCu---AGGCCGua-UCGG- -5'
8111 3' -52.3 NC_001978.2 + 14583 0.67 0.748367
Target:  5'- cACCugAaggUGAuuguGCGcGUCCGGCGUcgGGCCu -3'
miRNA:   3'- -UGGugUa--GCU----UGC-UAGGCCGUA--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.