miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8118 5' -53.3 NC_001978.2 + 24838 0.66 0.726753
Target:  5'- cGCugGGGCuaccGGUGCGCCuacugcGACGCAa-- -3'
miRNA:   3'- -CGuuCCCGu---UCGUGCGG------CUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 9810 0.66 0.715552
Target:  5'- cGCu-GGGCAAGguCGaCGGCGCGg-- -3'
miRNA:   3'- -CGuuCCCGUUCguGCgGCUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 17776 0.66 0.715552
Target:  5'- --cGGGGCcgaauuGGUccgACGCCGACACGa-- -3'
miRNA:   3'- cguUCCCGu-----UCG---UGCGGCUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 38788 0.66 0.715552
Target:  5'- cGCccAGGGCGAGCAauuCCGAgACAa-- -3'
miRNA:   3'- -CGu-UCCCGUUCGUgc-GGCUgUGUaua -5'
8118 5' -53.3 NC_001978.2 + 27508 0.66 0.708787
Target:  5'- aGCGGcGGCAGGCgcgucagcgaacuucACGCCGACAa---- -3'
miRNA:   3'- -CGUUcCCGUUCG---------------UGCGGCUGUguaua -5'
8118 5' -53.3 NC_001978.2 + 15542 0.66 0.69289
Target:  5'- gGCAGGGGCGacgucGGCAagGUCGACGgAg-- -3'
miRNA:   3'- -CGUUCCCGU-----UCGUg-CGGCUGUgUaua -5'
8118 5' -53.3 NC_001978.2 + 12814 0.66 0.681455
Target:  5'- gGCGucGGGUcagacguacggAAGCACGUCGGCGgGUGg -3'
miRNA:   3'- -CGUu-CCCG-----------UUCGUGCGGCUGUgUAUa -5'
8118 5' -53.3 NC_001978.2 + 26684 0.66 0.681455
Target:  5'- uGCuguGGGGCAAGgGCGCCaACGgAa-- -3'
miRNA:   3'- -CGu--UCCCGUUCgUGCGGcUGUgUaua -5'
8118 5' -53.3 NC_001978.2 + 38154 0.66 0.681455
Target:  5'- gGCAGuGGGCGAGCcagucauacgcCGCCGAcCGCGa-- -3'
miRNA:   3'- -CGUU-CCCGUUCGu----------GCGGCU-GUGUaua -5'
8118 5' -53.3 NC_001978.2 + 15932 0.66 0.669968
Target:  5'- aCAAGGGCGacacgGGCGCGaCgGGCGCcgAc -3'
miRNA:   3'- cGUUCCCGU-----UCGUGC-GgCUGUGuaUa -5'
8118 5' -53.3 NC_001978.2 + 15656 0.66 0.669968
Target:  5'- cGCugGGGCucG-ACGgCGACACGUAc -3'
miRNA:   3'- -CGuuCCCGuuCgUGCgGCUGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 34024 0.67 0.651513
Target:  5'- aCAAGGGCAAGaccccgguucagaaGCGCCGugAUc--- -3'
miRNA:   3'- cGUUCCCGUUCg-------------UGCGGCugUGuaua -5'
8118 5' -53.3 NC_001978.2 + 23734 0.67 0.635321
Target:  5'- uCGAGauuGGCGAGCACagcgccacccuuGCCGACGCGc-- -3'
miRNA:   3'- cGUUC---CCGUUCGUG------------CGGCUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 83 0.67 0.62375
Target:  5'- gGCAAGcGGCAcuucGGCACGCUGAgAa---- -3'
miRNA:   3'- -CGUUC-CCGU----UCGUGCGGCUgUguaua -5'
8118 5' -53.3 NC_001978.2 + 4188 0.67 0.62375
Target:  5'- aGCGGGGGCAggcucaggcuccGGCucuuCGCCGACu----- -3'
miRNA:   3'- -CGUUCCCGU------------UCGu---GCGGCUGuguaua -5'
8118 5' -53.3 NC_001978.2 + 12159 0.68 0.56623
Target:  5'- uCGGGGGCAcGGCugGgggCGGCACGUGg -3'
miRNA:   3'- cGUUCCCGU-UCGugCg--GCUGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 34323 0.68 0.554864
Target:  5'- gGCuccGGCAAGCucCGCCGACggcGCAUGa -3'
miRNA:   3'- -CGuucCCGUUCGu-GCGGCUG---UGUAUa -5'
8118 5' -53.3 NC_001978.2 + 28595 0.69 0.543567
Target:  5'- cGCGcGGGCAAGUggguaacgacguACGCCGAC-CGg-- -3'
miRNA:   3'- -CGUuCCCGUUCG------------UGCGGCUGuGUaua -5'
8118 5' -53.3 NC_001978.2 + 24904 0.69 0.543567
Target:  5'- aGCAAGGGgG---GCGCCGACGCu--- -3'
miRNA:   3'- -CGUUCCCgUucgUGCGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 28252 0.69 0.532345
Target:  5'- gGCAcGGGUucAGGCGCGCCGuauagauCACGUc- -3'
miRNA:   3'- -CGUuCCCG--UUCGUGCGGCu------GUGUAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.