Results 1 - 20 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 39326 | 1.15 | 0.00029 |
Target: 5'- aCCUCAGCGGCGAAGCCCGCAAUACGCg -3' miRNA: 3'- -GGAGUCGCCGCUUCGGGCGUUAUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 20317 | 0.79 | 0.105331 |
Target: 5'- gCUCGaCGGUcaagGAAGCCCGCAcgGCGCg -3' miRNA: 3'- gGAGUcGCCG----CUUCGGGCGUuaUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 31402 | 0.77 | 0.152252 |
Target: 5'- gCUCAGCGGaaGAGCgCCGCAAcccgggACGCg -3' miRNA: 3'- gGAGUCGCCgcUUCG-GGCGUUa-----UGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 15627 | 0.77 | 0.148053 |
Target: 5'- gCCUCAGUgccGGUGAAGCcuuCCGCAacagcgacuucGUACGCg -3' miRNA: 3'- -GGAGUCG---CCGCUUCG---GGCGU-----------UAUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 416 | 0.74 | 0.223278 |
Target: 5'- -gUCGGCGcgacggucGUGAAGCUCGCAGUaACGCa -3' miRNA: 3'- ggAGUCGC--------CGCUUCGGGCGUUA-UGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 591 | 0.73 | 0.282571 |
Target: 5'- gCUUCAGCGGCaacGAuGCCagGCGcAUACGCg -3' miRNA: 3'- -GGAGUCGCCG---CUuCGGg-CGU-UAUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 18514 | 0.72 | 0.328637 |
Target: 5'- aCCUgAGCGGCGcuauGCCCcCAGgaugGCGUg -3' miRNA: 3'- -GGAgUCGCCGCuu--CGGGcGUUa---UGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 37458 | 0.72 | 0.304937 |
Target: 5'- gCCUCAGCGGCGcuaucgauGGUCgGCGccguugcuucGUugGCu -3' miRNA: 3'- -GGAGUCGCCGCu-------UCGGgCGU----------UAugCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 32250 | 0.72 | 0.312689 |
Target: 5'- cCCUCAGCGGUGcgcgcGUCCGuCGAUACcCg -3' miRNA: 3'- -GGAGUCGCCGCuu---CGGGC-GUUAUGcG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 34025 | 0.72 | 0.320589 |
Target: 5'- gCCUgGGUGGCGAcuCgCGCGgacuGUACGCg -3' miRNA: 3'- -GGAgUCGCCGCUucGgGCGU----UAUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 39451 | 0.71 | 0.371094 |
Target: 5'- aCUCAGCGGgcuCGAugaucGGUCCGCAAUcaaGCu -3' miRNA: 3'- gGAGUCGCC---GCU-----UCGGGCGUUAug-CG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 33503 | 0.71 | 0.380022 |
Target: 5'- gCUCAGCGcGCGGucuuucuucGGCCCGUAgccGUAccCGCc -3' miRNA: 3'- gGAGUCGC-CGCU---------UCGGGCGU---UAU--GCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 23924 | 0.71 | 0.380022 |
Target: 5'- cCUUCA-CGGCGucGUCagaaGCGGUGCGCa -3' miRNA: 3'- -GGAGUcGCCGCuuCGGg---CGUUAUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 26826 | 0.71 | 0.362309 |
Target: 5'- uCCUCAaacGUGGCGAAGggcgucgucUUCGUGAUGCGCc -3' miRNA: 3'- -GGAGU---CGCCGCUUC---------GGGCGUUAUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 9802 | 0.7 | 0.407656 |
Target: 5'- uCCUCAGCcugGGUGccgaaGAGCgucacagcggUCGCGAUACGCu -3' miRNA: 3'- -GGAGUCG---CCGC-----UUCG----------GGCGUUAUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 4986 | 0.7 | 0.407656 |
Target: 5'- gCUCAGCGGuCGcacGCUCGCGcgccucaaaGUugGCg -3' miRNA: 3'- gGAGUCGCC-GCuu-CGGGCGU---------UAugCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 34258 | 0.69 | 0.486052 |
Target: 5'- gCCgUCGGCGGagcuugcCGGAGCCaCGCuguacacgACGCg -3' miRNA: 3'- -GG-AGUCGCC-------GCUUCGG-GCGuua-----UGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 9499 | 0.69 | 0.487091 |
Target: 5'- uCUUCAG-GGUGgcGCUCGCG--ACGCu -3' miRNA: 3'- -GGAGUCgCCGCuuCGGGCGUuaUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 21406 | 0.69 | 0.466512 |
Target: 5'- nCCUUAcgGGCGAAGCCCcCGG-GCGCg -3' miRNA: 3'- -GGAGUcgCCGCUUCGGGcGUUaUGCG- -5' |
|||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 25496 | 0.69 | 0.44639 |
Target: 5'- gCCUCAGCcugGGCGAcgucgAGCCCGaacCGGUcggcgGCGUa -3' miRNA: 3'- -GGAGUCG---CCGCU-----UCGGGC---GUUA-----UGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home