miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8153 3' -54 NC_001978.2 + 870 0.66 0.696852
Target:  5'- gGGUcgAGUGCuccGGCGcCuGGGCGCGCGa -3'
miRNA:   3'- gUCA--UCGCGuu-UCGCaG-CUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 28276 0.66 0.685554
Target:  5'- uCAGgcGCGCGuguucGGCGUCaaGGCACGgGu -3'
miRNA:   3'- -GUCauCGCGUu----UCGCAGc-UCGUGCgU- -5'
8153 3' -54 NC_001978.2 + 22961 0.66 0.685554
Target:  5'- cUAGUcGCGCGucacGGGCGUCacgauGAGCGCGa- -3'
miRNA:   3'- -GUCAuCGCGU----UUCGCAG-----CUCGUGCgu -5'
8153 3' -54 NC_001978.2 + 29107 0.66 0.685554
Target:  5'- uGGcAGCGUGAAGCG-CGcGGCACGgGg -3'
miRNA:   3'- gUCaUCGCGUUUCGCaGC-UCGUGCgU- -5'
8153 3' -54 NC_001978.2 + 26181 0.66 0.674201
Target:  5'- cCAGgauGCGCGcAGCGUCG-GCGCc-- -3'
miRNA:   3'- -GUCau-CGCGUuUCGCAGCuCGUGcgu -5'
8153 3' -54 NC_001978.2 + 24450 0.66 0.674201
Target:  5'- cCAGggcaGGCGC--AGCGUCGGGCcCGa- -3'
miRNA:   3'- -GUCa---UCGCGuuUCGCAGCUCGuGCgu -5'
8153 3' -54 NC_001978.2 + 14031 0.66 0.673064
Target:  5'- cCAGUGGCgauuaacGCGAAcGCGUUGAGUccguCGCu -3'
miRNA:   3'- -GUCAUCG-------CGUUU-CGCAGCUCGu---GCGu -5'
8153 3' -54 NC_001978.2 + 21891 0.66 0.662806
Target:  5'- gGGUGGaCGUAGaAGCG-CGAGC-CGCc -3'
miRNA:   3'- gUCAUC-GCGUU-UCGCaGCUCGuGCGu -5'
8153 3' -54 NC_001978.2 + 38520 0.66 0.651379
Target:  5'- ---cAGCGCGAa--GUCGAGCGCGaCGg -3'
miRNA:   3'- gucaUCGCGUUucgCAGCUCGUGC-GU- -5'
8153 3' -54 NC_001978.2 + 3600 0.66 0.651379
Target:  5'- -cGUGcGCGCGAAGCGUggCGuGC-CGCu -3'
miRNA:   3'- guCAU-CGCGUUUCGCA--GCuCGuGCGu -5'
8153 3' -54 NC_001978.2 + 22197 0.66 0.651379
Target:  5'- aAGUGcucGaCGUAGGGCGUCagaucAGCGCGCAc -3'
miRNA:   3'- gUCAU---C-GCGUUUCGCAGc----UCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 4302 0.67 0.639933
Target:  5'- ---gGGCGCAuuucuauGCG-CGGGUACGCGu -3'
miRNA:   3'- gucaUCGCGUuu-----CGCaGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 34260 0.67 0.628479
Target:  5'- aCAGUu-CGCAuAGUcggaGUUGGGCGCGCAc -3'
miRNA:   3'- -GUCAucGCGUuUCG----CAGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 41171 0.67 0.628479
Target:  5'- aGGUGGCGU--GGUGcUGAGCACaGCGc -3'
miRNA:   3'- gUCAUCGCGuuUCGCaGCUCGUG-CGU- -5'
8153 3' -54 NC_001978.2 + 35582 0.67 0.628479
Target:  5'- ---cGGCGCcccuGAGCGUCG-GCGCGa- -3'
miRNA:   3'- gucaUCGCGu---UUCGCAGCuCGUGCgu -5'
8153 3' -54 NC_001978.2 + 33117 0.67 0.628479
Target:  5'- -cGUGGCGUGAcguccugggcaAGCGUUG-GCACGUu -3'
miRNA:   3'- guCAUCGCGUU-----------UCGCAGCuCGUGCGu -5'
8153 3' -54 NC_001978.2 + 34166 0.67 0.628479
Target:  5'- -cGUGG-GCAacuGAGCGccgUCGAGUGCGCGc -3'
miRNA:   3'- guCAUCgCGU---UUCGC---AGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 8818 0.67 0.617029
Target:  5'- cCGGUcgGGgGCGAAGCGggggcacUGAGCGcCGCAc -3'
miRNA:   3'- -GUCA--UCgCGUUUCGCa------GCUCGU-GCGU- -5'
8153 3' -54 NC_001978.2 + 31823 0.67 0.617029
Target:  5'- cCGGaAGC-CGGAcGCGUCGAGUGCGUc -3'
miRNA:   3'- -GUCaUCGcGUUU-CGCAGCUCGUGCGu -5'
8153 3' -54 NC_001978.2 + 16803 0.67 0.615884
Target:  5'- cCAGUAGCGCccaggcuGAAGCacgGUCGAcGCAauggGCAg -3'
miRNA:   3'- -GUCAUCGCG-------UUUCG---CAGCU-CGUg---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.