miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8155 5' -57.7 NC_001978.2 + 25576 0.66 0.567706
Target:  5'- uGGCGCCcaGGGGCG--UGACCUGagCGGc -3'
miRNA:   3'- -CCGCGG--CCUCGUgaGCUGGGUaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 34981 0.66 0.567706
Target:  5'- gGGUGUCGaGuaaugccGCACUCaGugCCGUUCGa -3'
miRNA:   3'- -CCGCGGC-Cu------CGUGAG-CugGGUAAGCc -5'
8155 5' -57.7 NC_001978.2 + 9772 0.66 0.557005
Target:  5'- cGCGuuGcugaaGCUCGACCCGUcgUCGGc -3'
miRNA:   3'- cCGCggCcucg-UGAGCUGGGUA--AGCC- -5'
8155 5' -57.7 NC_001978.2 + 21664 0.66 0.557005
Target:  5'- cGGCGCUGuGAcgGCAUgaCGaaGCCCcgUCGGu -3'
miRNA:   3'- -CCGCGGC-CU--CGUGa-GC--UGGGuaAGCC- -5'
8155 5' -57.7 NC_001978.2 + 14335 0.66 0.546363
Target:  5'- -aCGCCGGAGCGaaggUGugUCuUUCGGc -3'
miRNA:   3'- ccGCGGCCUCGUga--GCugGGuAAGCC- -5'
8155 5' -57.7 NC_001978.2 + 1491 0.66 0.546363
Target:  5'- uGGCGCCGGaAGCA-UCGGaCCGUUg-- -3'
miRNA:   3'- -CCGCGGCC-UCGUgAGCUgGGUAAgcc -5'
8155 5' -57.7 NC_001978.2 + 18157 0.66 0.525283
Target:  5'- cGGCGCCGGAguaaccGCGCUUGcgcuGCCacUUCGc -3'
miRNA:   3'- -CCGCGGCCU------CGUGAGC----UGGguAAGCc -5'
8155 5' -57.7 NC_001978.2 + 39569 0.66 0.525283
Target:  5'- cGuCGCCGGAagGUGgUCGACCCGUcCGc -3'
miRNA:   3'- cC-GCGGCCU--CGUgAGCUGGGUAaGCc -5'
8155 5' -57.7 NC_001978.2 + 5109 0.66 0.525283
Target:  5'- uGGCGUCGauaccGCGCUUGAUCCGgccgucaaagUCGGc -3'
miRNA:   3'- -CCGCGGCcu---CGUGAGCUGGGUa---------AGCC- -5'
8155 5' -57.7 NC_001978.2 + 31468 0.66 0.522147
Target:  5'- cGGC-CCGGAGCACUcccgaacaacacaaCGACCgAa--GGg -3'
miRNA:   3'- -CCGcGGCCUCGUGA--------------GCUGGgUaagCC- -5'
8155 5' -57.7 NC_001978.2 + 24835 0.66 0.51382
Target:  5'- cGGCGCUGGGGCuaccggugcgccuACUgcgacgcaaaggCGACCCAUcUUGa -3'
miRNA:   3'- -CCGCGGCCUCG-------------UGA------------GCUGGGUA-AGCc -5'
8155 5' -57.7 NC_001978.2 + 35672 0.67 0.504518
Target:  5'- --aGaCCGGucGGCACUCGAagcCCCGUaCGGa -3'
miRNA:   3'- ccgC-GGCC--UCGUGAGCU---GGGUAaGCC- -5'
8155 5' -57.7 NC_001978.2 + 29224 0.67 0.494268
Target:  5'- cGGUuCCGGucgagcggcaGGCGC-CGACCCGUgaCGGa -3'
miRNA:   3'- -CCGcGGCC----------UCGUGaGCUGGGUAa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 26135 0.67 0.494268
Target:  5'- nGCGCCGGuacgguGCGCgacuUCGGCCUua-CGGu -3'
miRNA:   3'- cCGCGGCCu-----CGUG----AGCUGGGuaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 19766 0.67 0.494268
Target:  5'- uGGCGUagucGAGCGCuUCGGCCCAgUCc- -3'
miRNA:   3'- -CCGCGgc--CUCGUG-AGCUGGGUaAGcc -5'
8155 5' -57.7 NC_001978.2 + 25452 0.67 0.494268
Target:  5'- aGGCGCUGGGGC-UUCGcuacuCCCccgaCGGg -3'
miRNA:   3'- -CCGCGGCCUCGuGAGCu----GGGuaa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 9126 0.67 0.494268
Target:  5'- -cCGCCGGugaaguGUAUUCGGCCgGUUaCGGc -3'
miRNA:   3'- ccGCGGCCu-----CGUGAGCUGGgUAA-GCC- -5'
8155 5' -57.7 NC_001978.2 + 23799 0.67 0.473064
Target:  5'- -uUGCCgacuaguGGcAGCGCUCGACCCGgcgUCGc -3'
miRNA:   3'- ccGCGG-------CC-UCGUGAGCUGGGUa--AGCc -5'
8155 5' -57.7 NC_001978.2 + 13948 0.67 0.464117
Target:  5'- cGUGauuaCGGAGCGCUCGACgUcgUUGa -3'
miRNA:   3'- cCGCg---GCCUCGUGAGCUGgGuaAGCc -5'
8155 5' -57.7 NC_001978.2 + 32985 0.67 0.45428
Target:  5'- cGUGCCgcgaauggcagGGGGCACgacCGGCUCAgugUCGGc -3'
miRNA:   3'- cCGCGG-----------CCUCGUGa--GCUGGGUa--AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.