miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 3' -52.1 NC_001978.2 + 38754 0.66 0.837267
Target:  5'- -cGCGUccauGACCuucaGGC-GCG-AGAAGCGCg -3'
miRNA:   3'- guUGCA----CUGG----CCGaUGCaUCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 20584 0.66 0.837267
Target:  5'- -----cGACCGGuCUgcccgaccugACGgcGGAGCGCa -3'
miRNA:   3'- guugcaCUGGCC-GA----------UGCauCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 6562 0.66 0.837267
Target:  5'- cCAACGUG-CCGGgUgACGUuc-AGUGCa -3'
miRNA:   3'- -GUUGCACuGGCCgA-UGCAucuUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 20677 0.66 0.837267
Target:  5'- aCGACGuUGAgCGGCa----GGggGCGCa -3'
miRNA:   3'- -GUUGC-ACUgGCCGaugcaUCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 39778 0.66 0.837267
Target:  5'- aAGCGUcGGgCGGCUucccacAGAAGCGCc -3'
miRNA:   3'- gUUGCA-CUgGCCGAugca--UCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 14930 0.66 0.827973
Target:  5'- -cGCGUGcguACCGGCacgggcaACGUAu-GGCGCg -3'
miRNA:   3'- guUGCAC---UGGCCGa------UGCAUcuUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 4523 0.66 0.827973
Target:  5'- gCAGCGUG-CCGGaagACGUgcgccccaguagGGAAcGCGUg -3'
miRNA:   3'- -GUUGCACuGGCCga-UGCA------------UCUU-CGCG- -5'
8161 3' -52.1 NC_001978.2 + 38108 0.66 0.818456
Target:  5'- gAGCGUcACCGGCUcgcCGUcgucguccugGGGcAGCGCg -3'
miRNA:   3'- gUUGCAcUGGCCGAu--GCA----------UCU-UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 36867 0.66 0.808729
Target:  5'- uGGCGUcACCGGCUGaaccCGguuGAGGuCGCu -3'
miRNA:   3'- gUUGCAcUGGCCGAU----GCau-CUUC-GCG- -5'
8161 3' -52.1 NC_001978.2 + 6917 0.66 0.808729
Target:  5'- --cCGUGugCGGgUGCGcGGucGCGUc -3'
miRNA:   3'- guuGCACugGCCgAUGCaUCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 15405 0.66 0.808729
Target:  5'- gAAUcUGACCGGCguCGUuGgcGCGCg -3'
miRNA:   3'- gUUGcACUGGCCGauGCAuCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 28108 0.66 0.798802
Target:  5'- cCGGCGccGACgGGUcgACGUAGAA-CGCa -3'
miRNA:   3'- -GUUGCa-CUGgCCGa-UGCAUCUUcGCG- -5'
8161 3' -52.1 NC_001978.2 + 18589 0.66 0.798802
Target:  5'- -cGCGUcuCCGGCaGCGUuacGGAuaucAGCGCg -3'
miRNA:   3'- guUGCAcuGGCCGaUGCA---UCU----UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 36733 0.66 0.788687
Target:  5'- --cCGcGACCGGCUc---AGggGCGCu -3'
miRNA:   3'- guuGCaCUGGCCGAugcaUCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 17285 0.67 0.778396
Target:  5'- gGGCGUGaACUGGUUcCGgaacaAGggGCGUu -3'
miRNA:   3'- gUUGCAC-UGGCCGAuGCa----UCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 32318 0.67 0.778396
Target:  5'- --uCGUGAcCCGGUcgACGUu-GAGCGCu -3'
miRNA:   3'- guuGCACU-GGCCGa-UGCAucUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 28294 0.67 0.767941
Target:  5'- gUAGCGUcGGCCGGaUGCucAGgcGCGCg -3'
miRNA:   3'- -GUUGCA-CUGGCCgAUGcaUCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 10868 0.67 0.757336
Target:  5'- cCAugGgugGACCGGCguccGgGUGGAcccguguuggcgAGCGUg -3'
miRNA:   3'- -GUugCa--CUGGCCGa---UgCAUCU------------UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 32708 0.67 0.746593
Target:  5'- uCAGCGUcagucGGCCGGUcccgguUGUAGGcAGCGCc -3'
miRNA:   3'- -GUUGCA-----CUGGCCGau----GCAUCU-UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 35771 0.67 0.740087
Target:  5'- gCAGCGUGGCCgugucguccgucuccGGCUcCGUAcGggGCu- -3'
miRNA:   3'- -GUUGCACUGG---------------CCGAuGCAU-CuuCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.