miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8170 3' -54.8 NC_001978.2 + 35467 0.66 0.689765
Target:  5'- cUGGCGuCCGCagcaacggcguUCGGCCUGGGa---GCg -3'
miRNA:   3'- aGCCGC-GGCG-----------AGCUGGACUUgaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 11702 0.66 0.689765
Target:  5'- cCGGCGCCGgucccugcccUUCGAUCUGccACg--GCa -3'
miRNA:   3'- aGCCGCGGC----------GAGCUGGACu-UGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 33570 0.66 0.687544
Target:  5'- gUCGGCGCCGUgaccgucgggugUGACCccGGGCcggaaUGCa -3'
miRNA:   3'- -AGCCGCGGCGa-----------GCUGGa-CUUGaa---ACG- -5'
8170 3' -54.8 NC_001978.2 + 2985 0.66 0.656268
Target:  5'- -gGGCGCCGUUCGGCUUc--Cg--GCg -3'
miRNA:   3'- agCCGCGGCGAGCUGGAcuuGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 23670 0.66 0.645041
Target:  5'- gUGGCGCUguGCUCGccaaucucgaACUUGAGCU-UGUg -3'
miRNA:   3'- aGCCGCGG--CGAGC----------UGGACUUGAaACG- -5'
8170 3' -54.8 NC_001978.2 + 11573 0.66 0.645041
Target:  5'- aCGucGCGUaaaGCUCGACC-GAAUgUUGCa -3'
miRNA:   3'- aGC--CGCGg--CGAGCUGGaCUUGaAACG- -5'
8170 3' -54.8 NC_001978.2 + 32283 0.66 0.633801
Target:  5'- gCGcGCuGCCGCUCaGCCUcAGCcgUGCg -3'
miRNA:   3'- aGC-CG-CGGCGAGcUGGAcUUGaaACG- -5'
8170 3' -54.8 NC_001978.2 + 35994 0.66 0.633801
Target:  5'- cCGGagacuGCCGC-CGACCcGGGCguugugUGCg -3'
miRNA:   3'- aGCCg----CGGCGaGCUGGaCUUGaa----ACG- -5'
8170 3' -54.8 NC_001978.2 + 2291 0.67 0.62256
Target:  5'- gUGGCuuGCCGCauucgCGACCUGAAgg-UGUu -3'
miRNA:   3'- aGCCG--CGGCGa----GCUGGACUUgaaACG- -5'
8170 3' -54.8 NC_001978.2 + 28057 0.67 0.620312
Target:  5'- gUCGGCGCCGgacacucagggCGACCU-AACg--GCg -3'
miRNA:   3'- -AGCCGCGGCga---------GCUGGAcUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 40896 0.67 0.611327
Target:  5'- -gGGUGCgUGCUCGAC----GCUUUGCg -3'
miRNA:   3'- agCCGCG-GCGAGCUGgacuUGAAACG- -5'
8170 3' -54.8 NC_001978.2 + 8961 0.67 0.600114
Target:  5'- gUCGGCGUCGCccauaaucgUGAUCUGAAUgg-GUc -3'
miRNA:   3'- -AGCCGCGGCGa--------GCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 23221 0.67 0.588929
Target:  5'- gUGGCGUauCUCGACCggcGAACaguccgUUGCg -3'
miRNA:   3'- aGCCGCGgcGAGCUGGa--CUUGa-----AACG- -5'
8170 3' -54.8 NC_001978.2 + 16707 0.67 0.588929
Target:  5'- gUCGGCGCCGUUCcGCUgcc-CaUUGCg -3'
miRNA:   3'- -AGCCGCGGCGAGcUGGacuuGaAACG- -5'
8170 3' -54.8 NC_001978.2 + 21159 0.67 0.577782
Target:  5'- cUCGGCGUCGCucuucUCGGCCUucGGCUcaaGCu -3'
miRNA:   3'- -AGCCGCGGCG-----AGCUGGAc-UUGAaa-CG- -5'
8170 3' -54.8 NC_001978.2 + 21616 0.68 0.566681
Target:  5'- aCaGCGCCGCacagcggaUGACCUGGGCUgaGUg -3'
miRNA:   3'- aGcCGCGGCGa-------GCUGGACUUGAaaCG- -5'
8170 3' -54.8 NC_001978.2 + 35001 0.68 0.555636
Target:  5'- cUCaGUGCCGUUCGAUCUGucCUUgucUGUc -3'
miRNA:   3'- -AGcCGCGGCGAGCUGGACuuGAA---ACG- -5'
8170 3' -54.8 NC_001978.2 + 11653 0.68 0.554535
Target:  5'- cCGGCGCCGgaCGACCcGGuaagccgcuucACUcaguacggcagcgUUGCg -3'
miRNA:   3'- aGCCGCGGCgaGCUGGaCU-----------UGA-------------AACG- -5'
8170 3' -54.8 NC_001978.2 + 27113 0.68 0.533744
Target:  5'- gUCGGCGg-GCauugUGGCCUGGGCggUGCg -3'
miRNA:   3'- -AGCCGCggCGa---GCUGGACUUGaaACG- -5'
8170 3' -54.8 NC_001978.2 + 21237 0.68 0.530486
Target:  5'- uUCGcGCuGCCGCcgacgcguucgaccUUGACCUGAGCgc-GCu -3'
miRNA:   3'- -AGC-CG-CGGCG--------------AGCUGGACUUGaaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.