miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 5' -55 NC_001978.2 + 37949 0.65 0.731383
Target:  5'- aCCCG-CUcACGCgCGACGUuguacgggACGgcGCCc -3'
miRNA:   3'- -GGGCuGA-UGCG-GCUGCA--------UGCaaCGGc -5'
8174 5' -55 NC_001978.2 + 9075 0.65 0.731383
Target:  5'- aCCGGCgccaAUGCCGACG-GCGauagcGCCa -3'
miRNA:   3'- gGGCUGa---UGCGGCUGCaUGCaa---CGGc -5'
8174 5' -55 NC_001978.2 + 18806 0.65 0.730326
Target:  5'- cCCCGGCUuuuggguGCGCgCGGCGUuccccgcuaucgACGcUGCgGa -3'
miRNA:   3'- -GGGCUGA-------UGCG-GCUGCA------------UGCaACGgC- -5'
8174 5' -55 NC_001978.2 + 15014 0.66 0.720764
Target:  5'- uUCGGCUuCGUCG-CGccaUACGUUGCCc -3'
miRNA:   3'- gGGCUGAuGCGGCuGC---AUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 37760 0.66 0.720764
Target:  5'- aCCCagggGCGCaCGACGggcGgGUUGCCGu -3'
miRNA:   3'- -GGGcugaUGCG-GCUGCa--UgCAACGGC- -5'
8174 5' -55 NC_001978.2 + 33631 0.66 0.720764
Target:  5'- aCCCGACggucacgGCGCCGACaaggGCGacacCCGc -3'
miRNA:   3'- -GGGCUGa------UGCGGCUGca--UGCaac-GGC- -5'
8174 5' -55 NC_001978.2 + 13198 0.66 0.710056
Target:  5'- aCCCGACUGgggcggcuUGCUGugGaccACGacgGCCGa -3'
miRNA:   3'- -GGGCUGAU--------GCGGCugCa--UGCaa-CGGC- -5'
8174 5' -55 NC_001978.2 + 5615 0.66 0.699272
Target:  5'- uCCUGACggacGCGaCCGGCGccaACGcUGCCu -3'
miRNA:   3'- -GGGCUGa---UGC-GGCUGCa--UGCaACGGc -5'
8174 5' -55 NC_001978.2 + 6702 0.66 0.699272
Target:  5'- aCCGGCUacguagaagcgcACGCCGuuGUcACGacGCCGg -3'
miRNA:   3'- gGGCUGA------------UGCGGCugCA-UGCaaCGGC- -5'
8174 5' -55 NC_001978.2 + 37436 0.66 0.699272
Target:  5'- cUCCGcCUACGCCGACGaagacacgACGacGCUc -3'
miRNA:   3'- -GGGCuGAUGCGGCUGCa-------UGCaaCGGc -5'
8174 5' -55 NC_001978.2 + 17422 0.66 0.688422
Target:  5'- cUCCGugUGCgaGCCGcCcc-CGUUGCCGa -3'
miRNA:   3'- -GGGCugAUG--CGGCuGcauGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 14873 0.66 0.688422
Target:  5'- aCCGGucACGCCGACGUAauCGgcGCg- -3'
miRNA:   3'- gGGCUgaUGCGGCUGCAU--GCaaCGgc -5'
8174 5' -55 NC_001978.2 + 32654 0.66 0.688422
Target:  5'- gCCGACUgACGCUGACGcccUGgGggaaGCCGc -3'
miRNA:   3'- gGGCUGA-UGCGGCUGC---AUgCaa--CGGC- -5'
8174 5' -55 NC_001978.2 + 16300 0.66 0.688422
Target:  5'- aCCCGGCUucguguUGaCCGACGUcacgGCGUucggGUCGg -3'
miRNA:   3'- -GGGCUGAu-----GC-GGCUGCA----UGCAa---CGGC- -5'
8174 5' -55 NC_001978.2 + 33877 0.66 0.677518
Target:  5'- gCgCGugUACGCCGACGacgacccuUACGgcgacgUGuuGg -3'
miRNA:   3'- -GgGCugAUGCGGCUGC--------AUGCa-----ACggC- -5'
8174 5' -55 NC_001978.2 + 34201 0.67 0.655592
Target:  5'- cUCCGACUAUG-CGAacUGUGUUGCCGa -3'
miRNA:   3'- -GGGCUGAUGCgGCUgcAUGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 29388 0.67 0.655592
Target:  5'- gCCCGucguCGCCGACGcugaccUAgGggGCCGg -3'
miRNA:   3'- -GGGCugauGCGGCUGC------AUgCaaCGGC- -5'
8174 5' -55 NC_001978.2 + 15388 0.67 0.655592
Target:  5'- --aGACgaACGCCGACGUugcCGUUGgCGu -3'
miRNA:   3'- gggCUGa-UGCGGCUGCAu--GCAACgGC- -5'
8174 5' -55 NC_001978.2 + 29723 0.67 0.655592
Target:  5'- aCCCGGCggaGCCuGgGaACGUUGCUGa -3'
miRNA:   3'- -GGGCUGaugCGGcUgCaUGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 22725 0.67 0.644591
Target:  5'- uCCUGGCauuCGUCGGCGU-CGUguucgucgcUGCCGu -3'
miRNA:   3'- -GGGCUGau-GCGGCUGCAuGCA---------ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.