miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8181 3' -56.9 NC_001978.2 + 33827 0.66 0.566592
Target:  5'- gUgACgucGCUCGACUGuCgGgCCGACGGCg -3'
miRNA:   3'- aAgUGa--UGAGCUGGU-G-CgGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 1741 0.66 0.566592
Target:  5'- -aCACuUACcgggucgugUCGGCgGaCGCCgGACGGCa -3'
miRNA:   3'- aaGUG-AUG---------AGCUGgU-GCGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 5422 0.66 0.566592
Target:  5'- --aGCUACcCGGCCACGaCUCagcguuccaugGGCGGCu -3'
miRNA:   3'- aagUGAUGaGCUGGUGC-GGG-----------CUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 35653 0.66 0.555679
Target:  5'- -gCGCccaGCUCGACCcCGaagaCCGGuCGGCa -3'
miRNA:   3'- aaGUGa--UGAGCUGGuGCg---GGCU-GCCG- -5'
8181 3' -56.9 NC_001978.2 + 25426 0.66 0.534047
Target:  5'- gUUCGg-GCUCGACguCGCCCaGGCugaGGCg -3'
miRNA:   3'- -AAGUgaUGAGCUGguGCGGG-CUG---CCG- -5'
8181 3' -56.9 NC_001978.2 + 6804 0.66 0.523342
Target:  5'- -gCGCUcaGCgUCGACCGgauUGCCCGgcgucgugacaACGGCg -3'
miRNA:   3'- aaGUGA--UG-AGCUGGU---GCGGGC-----------UGCCG- -5'
8181 3' -56.9 NC_001978.2 + 40754 0.66 0.523342
Target:  5'- aUCGCUugGCUCGcauggcuuGCCGCGUUCGGCGuCa -3'
miRNA:   3'- aAGUGA--UGAGC--------UGGUGCGGGCUGCcG- -5'
8181 3' -56.9 NC_001978.2 + 30020 0.66 0.523342
Target:  5'- cUCACgcgUugUCGcCCuuGCCCGuaagGCGGCu -3'
miRNA:   3'- aAGUG---AugAGCuGGugCGGGC----UGCCG- -5'
8181 3' -56.9 NC_001978.2 + 7215 0.66 0.512721
Target:  5'- cUUCGCcACccaugUUGACCAUGuUCCGGCGGUc -3'
miRNA:   3'- -AAGUGaUG-----AGCUGGUGC-GGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 15627 0.66 0.509552
Target:  5'- gUUCAacgGCUCGACgguuccggcggcuuCGCugggGCUCGACGGCg -3'
miRNA:   3'- -AAGUga-UGAGCUG--------------GUG----CGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 27307 0.67 0.502189
Target:  5'- --gGCaGCgUCGAgCACGCCCGGgaagaaacCGGCg -3'
miRNA:   3'- aagUGaUG-AGCUgGUGCGGGCU--------GCCG- -5'
8181 3' -56.9 NC_001978.2 + 7891 0.67 0.502189
Target:  5'- ----gUGCUCGACC-CGggCGACGGCg -3'
miRNA:   3'- aagugAUGAGCUGGuGCggGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 24851 0.67 0.491754
Target:  5'- cUUCG-UGCUCGACCccguaugccguCGCCCGAC-GCu -3'
miRNA:   3'- -AAGUgAUGAGCUGGu----------GCGGGCUGcCG- -5'
8181 3' -56.9 NC_001978.2 + 18259 0.67 0.461075
Target:  5'- cUCACUcucuguaaggggGCgccaugggCGACCACagcaaGCCgGGCGGCa -3'
miRNA:   3'- aAGUGA------------UGa-------GCUGGUG-----CGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 7373 0.67 0.461075
Target:  5'- ---gUUGCguggCGACCGaauggaGCCUGACGGCc -3'
miRNA:   3'- aaguGAUGa---GCUGGUg-----CGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 2899 0.68 0.450081
Target:  5'- -gCACUcUUCGGgcgggggcacuccCCAgCGCUCGACGGCa -3'
miRNA:   3'- aaGUGAuGAGCU-------------GGU-GCGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 34536 0.68 0.421808
Target:  5'- cUCGCcGgUcCGACCcUGCCgGACGGCu -3'
miRNA:   3'- aAGUGaUgA-GCUGGuGCGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 38628 0.68 0.41231
Target:  5'- aUC-CUGaaCGaauGCCGCGCCgGGCGGCu -3'
miRNA:   3'- aAGuGAUgaGC---UGGUGCGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 26529 0.68 0.402945
Target:  5'- gUCGCUGCcgaUCGAgUACGaCCCGAacgcccaGGCu -3'
miRNA:   3'- aAGUGAUG---AGCUgGUGC-GGGCUg------CCG- -5'
8181 3' -56.9 NC_001978.2 + 36077 0.69 0.393715
Target:  5'- gUUC-CUugUCGcACacaACGCCCGGguCGGCg -3'
miRNA:   3'- -AAGuGAugAGC-UGg--UGCGGGCU--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.