miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8185 5' -53 NC_001978.2 + 33120 0.66 0.798104
Target:  5'- gGCGuGACGuccugggcaaGCGuuGGcACGUUGCCGCc -3'
miRNA:   3'- gCGUuCUGC----------UGCuuCU-UGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 36803 0.66 0.798104
Target:  5'- uGCc-GACGACGAcguuccGGcGCGuCUGCCGa -3'
miRNA:   3'- gCGuuCUGCUGCU------UCuUGC-GACGGCg -5'
8185 5' -53 NC_001978.2 + 10774 0.66 0.798104
Target:  5'- aGCAAG-CGACGA----CGCaaaGCCGCc -3'
miRNA:   3'- gCGUUCuGCUGCUucuuGCGa--CGGCG- -5'
8185 5' -53 NC_001978.2 + 28000 0.66 0.798104
Target:  5'- -cCAGGACGGCGGcauuGGGACcgGCcucaaGCCGCu -3'
miRNA:   3'- gcGUUCUGCUGCU----UCUUG--CGa----CGGCG- -5'
8185 5' -53 NC_001978.2 + 34128 0.66 0.796111
Target:  5'- gGCGuucacaaGGACGGCGccaaccuGGGAACGCguacaGuCCGCg -3'
miRNA:   3'- gCGU-------UCUGCUGC-------UUCUUGCGa----C-GGCG- -5'
8185 5' -53 NC_001978.2 + 35524 0.66 0.788064
Target:  5'- gCGCcgGAGACGGCauacc-CGCUGCCGa -3'
miRNA:   3'- -GCG--UUCUGCUGcuucuuGCGACGGCg -5'
8185 5' -53 NC_001978.2 + 34601 0.66 0.788064
Target:  5'- gCGCAAGcuccGCGAcCGAcuGAACGCccagcuUGCCGg -3'
miRNA:   3'- -GCGUUC----UGCU-GCUu-CUUGCG------ACGGCg -5'
8185 5' -53 NC_001978.2 + 999 0.66 0.777852
Target:  5'- gGCgGGGGCGACGAcccGGAAgGCUucccagcaaGCgGCg -3'
miRNA:   3'- gCG-UUCUGCUGCU---UCUUgCGA---------CGgCG- -5'
8185 5' -53 NC_001978.2 + 23561 0.66 0.777852
Target:  5'- aCGCucGcCGACGAcccGGAGCuugGCCGCu -3'
miRNA:   3'- -GCGuuCuGCUGCU---UCUUGcgaCGGCG- -5'
8185 5' -53 NC_001978.2 + 23509 0.66 0.777852
Target:  5'- gGCA--GCGGCGAAGGaguacgACGC-GCCGa -3'
miRNA:   3'- gCGUucUGCUGCUUCU------UGCGaCGGCg -5'
8185 5' -53 NC_001978.2 + 10740 0.66 0.777852
Target:  5'- uGUggGGCGugccGCGAAGGGCGCUaucaaCgGCg -3'
miRNA:   3'- gCGuuCUGC----UGCUUCUUGCGAc----GgCG- -5'
8185 5' -53 NC_001978.2 + 40958 0.66 0.777852
Target:  5'- ---cGGGCGGuCGcuucuAGCGCUGCCGCg -3'
miRNA:   3'- gcguUCUGCU-GCuuc--UUGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 31611 0.66 0.777852
Target:  5'- gGCcGGACGGgaagcCGGAGucaAGCGCcgUGCCGUg -3'
miRNA:   3'- gCGuUCUGCU-----GCUUC---UUGCG--ACGGCG- -5'
8185 5' -53 NC_001978.2 + 20343 0.66 0.767481
Target:  5'- gCGCGAGA-GACGGAGcuGACGCcgGUCa- -3'
miRNA:   3'- -GCGUUCUgCUGCUUC--UUGCGa-CGGcg -5'
8185 5' -53 NC_001978.2 + 4169 0.66 0.767481
Target:  5'- gCGgAAGAgccgGACGAAGAGcCGgaGCCGg -3'
miRNA:   3'- -GCgUUCUg---CUGCUUCUU-GCgaCGGCg -5'
8185 5' -53 NC_001978.2 + 10232 0.66 0.767481
Target:  5'- -uCAAcGCGGCGAAGGugGUUGCgGg -3'
miRNA:   3'- gcGUUcUGCUGCUUCUugCGACGgCg -5'
8185 5' -53 NC_001978.2 + 26791 0.66 0.767481
Target:  5'- gGCA--ACGGCGggGGcauucccaACGaccuUGCCGCg -3'
miRNA:   3'- gCGUucUGCUGCuuCU--------UGCg---ACGGCG- -5'
8185 5' -53 NC_001978.2 + 35573 0.66 0.756962
Target:  5'- aGCcgGAGACGGCGccccuGAGCGUcGgCGCg -3'
miRNA:   3'- gCG--UUCUGCUGCuu---CUUGCGaCgGCG- -5'
8185 5' -53 NC_001978.2 + 26161 0.66 0.756962
Target:  5'- gGCGAGAgUGACGccauGAACGCU-CaCGCg -3'
miRNA:   3'- gCGUUCU-GCUGCuu--CUUGCGAcG-GCG- -5'
8185 5' -53 NC_001978.2 + 40582 0.66 0.756962
Target:  5'- cCGCuAAGgaACGGCGucGAGCGCUacccacucagGCCGg -3'
miRNA:   3'- -GCG-UUC--UGCUGCuuCUUGCGA----------CGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.