miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8186 3' -54.1 NC_001978.2 + 4193 0.66 0.731777
Target:  5'- ----gGGGGAGCGGGggcAGGCucAGGCu -3'
miRNA:   3'- gcuugCUCUUCGCCU---UCCGcuUCCGc -5'
8186 3' -54.1 NC_001978.2 + 5198 0.66 0.731777
Target:  5'- uCGAGuucgccccUGAGAAGCGcGAcGGCacGAAGGCc -3'
miRNA:   3'- -GCUU--------GCUCUUCGC-CUuCCG--CUUCCGc -5'
8186 3' -54.1 NC_001978.2 + 19392 0.66 0.717661
Target:  5'- gCGGugcGCGAagauccuugccgcuGAGGCGGAGcGCGAAGaGCGc -3'
miRNA:   3'- -GCU---UGCU--------------CUUCGCCUUcCGCUUC-CGC- -5'
8186 3' -54.1 NC_001978.2 + 3977 0.66 0.709997
Target:  5'- aCGAACcuGAAGCGGucGGcCGucucGGCGa -3'
miRNA:   3'- -GCUUGcuCUUCGCCuuCC-GCuu--CCGC- -5'
8186 3' -54.1 NC_001978.2 + 33907 0.66 0.698981
Target:  5'- -cGACGuGuuGGCGGAGcaucGGgGGAGGCGa -3'
miRNA:   3'- gcUUGCuCu-UCGCCUU----CCgCUUCCGC- -5'
8186 3' -54.1 NC_001978.2 + 28469 0.67 0.676757
Target:  5'- aCGGACGGcGGAGCacuGAAGGuCGAcaAGGCc -3'
miRNA:   3'- -GCUUGCU-CUUCGc--CUUCC-GCU--UCCGc -5'
8186 3' -54.1 NC_001978.2 + 24767 0.67 0.665572
Target:  5'- uGAGucAGAAGCGucGGGCGAcGGCa -3'
miRNA:   3'- gCUUgcUCUUCGCcuUCCGCUuCCGc -5'
8186 3' -54.1 NC_001978.2 + 973 0.67 0.665572
Target:  5'- gCGGucGCGcuucucGGCGGGAgucuGGCGggGGCGa -3'
miRNA:   3'- -GCU--UGCucu---UCGCCUU----CCGCuuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 4178 0.67 0.654356
Target:  5'- cCGGACGAagagccGGAGcCGGAAGGCaagccggacgacGAAGGgGc -3'
miRNA:   3'- -GCUUGCU------CUUC-GCCUUCCG------------CUUCCgC- -5'
8186 3' -54.1 NC_001978.2 + 32152 0.67 0.643118
Target:  5'- uGAACGAgGAAGCcGAccgGGGCGGacGGGUa -3'
miRNA:   3'- gCUUGCU-CUUCGcCU---UCCGCU--UCCGc -5'
8186 3' -54.1 NC_001978.2 + 22555 0.67 0.631869
Target:  5'- gGGACGGcucGCGGAAGGUGAucGGUa -3'
miRNA:   3'- gCUUGCUcuuCGCCUUCCGCUu-CCGc -5'
8186 3' -54.1 NC_001978.2 + 15902 0.68 0.609383
Target:  5'- uGAAgGGGAacaucaagGGCGcGAAgGGCGAcaaGGGCGa -3'
miRNA:   3'- gCUUgCUCU--------UCGC-CUU-CCGCU---UCCGC- -5'
8186 3' -54.1 NC_001978.2 + 25637 0.68 0.598165
Target:  5'- cCGGACGGGcAGCGcuGGGCGccguauGGCGu -3'
miRNA:   3'- -GCUUGCUCuUCGCcuUCCGCuu----CCGC- -5'
8186 3' -54.1 NC_001978.2 + 27938 0.69 0.553689
Target:  5'- uCGAACGGGGcguuGUGGAucAGGaacCGggGGCa -3'
miRNA:   3'- -GCUUGCUCUu---CGCCU--UCC---GCuuCCGc -5'
8186 3' -54.1 NC_001978.2 + 23486 0.69 0.542712
Target:  5'- cCGAAgcucuuCGAuGAGCGGAAGGCagcGGCGa -3'
miRNA:   3'- -GCUU------GCUcUUCGCCUUCCGcuuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 35831 0.69 0.531807
Target:  5'- uCGAACcggcGGGAGUGGucgagcuGGGCGAcGGCGu -3'
miRNA:   3'- -GCUUGc---UCUUCGCCu------UCCGCUuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 21615 0.69 0.520983
Target:  5'- gGGGCuguuGGggGCGGAgacGGGCGcucAGGCGu -3'
miRNA:   3'- gCUUGc---UCuuCGCCU---UCCGCu--UCCGC- -5'
8186 3' -54.1 NC_001978.2 + 19244 0.69 0.520983
Target:  5'- gGGGCGGGAacaugaAGCGGGucacucucGGCGgcGGCa -3'
miRNA:   3'- gCUUGCUCU------UCGCCUu-------CCGCuuCCGc -5'
8186 3' -54.1 NC_001978.2 + 37537 0.71 0.399464
Target:  5'- uCGAGCGGGGGcGCaccugGGAAGcccGCGAAGGUGg -3'
miRNA:   3'- -GCUUGCUCUU-CG-----CCUUC---CGCUUCCGC- -5'
8186 3' -54.1 NC_001978.2 + 4074 0.71 0.398528
Target:  5'- uGGGCGAGAAGUaccGGGugccgcugaaccuGGGCGAAgucGGCGa -3'
miRNA:   3'- gCUUGCUCUUCG---CCU-------------UCCGCUU---CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.