miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8192 3' -61 NC_001978.2 + 5131 0.66 0.413692
Target:  5'- gUCACAGCGuCCGUCG-CCuuaauggcgucgauaCCGCGCUu- -3'
miRNA:   3'- -GGUGUUGC-GGCGGCaGG---------------GGCGCGAcc -5'
8192 3' -61 NC_001978.2 + 6304 0.66 0.410081
Target:  5'- aCCGCAguACGCCucuaCCGUCUCaaCGCUGa -3'
miRNA:   3'- -GGUGU--UGCGGc---GGCAGGGgcGCGACc -5'
8192 3' -61 NC_001978.2 + 6795 0.66 0.410081
Target:  5'- gCCGCuuGCGCUGCCGUgaacgccgaCCuuGUGUcGGu -3'
miRNA:   3'- -GGUGu-UGCGGCGGCA---------GGggCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 2704 0.66 0.410081
Target:  5'- -aAUggUGCuCGCCGUUCaCgGCGCUGu -3'
miRNA:   3'- ggUGuuGCG-GCGGCAGG-GgCGCGACc -5'
8192 3' -61 NC_001978.2 + 35643 0.66 0.408283
Target:  5'- gCGcCGACGCucaggggCGCCGUCUCCggcucgacauccgGCGCUGa -3'
miRNA:   3'- gGU-GUUGCG-------GCGGCAGGGG-------------CGCGACc -5'
8192 3' -61 NC_001978.2 + 33045 0.66 0.407386
Target:  5'- cCCGCGAaGCCGcCCGUgcgcuacugcccaaCgCCGCGCcGGu -3'
miRNA:   3'- -GGUGUUgCGGC-GGCA--------------GgGGCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 35400 0.66 0.401142
Target:  5'- uCCGCAACGaucaCGCaacaagCgCCGuCGCUGGg -3'
miRNA:   3'- -GGUGUUGCg---GCGgca---GgGGC-GCGACC- -5'
8192 3' -61 NC_001978.2 + 34400 0.66 0.392327
Target:  5'- gUCACAAC-CCGCCGgauaCCCGCuGCc-- -3'
miRNA:   3'- -GGUGUUGcGGCGGCag--GGGCG-CGacc -5'
8192 3' -61 NC_001978.2 + 10627 0.66 0.383639
Target:  5'- uCgGCAGCGUCGUCGUUgCUcaGCGCcGGu -3'
miRNA:   3'- -GgUGUUGCGGCGGCAGgGG--CGCGaCC- -5'
8192 3' -61 NC_001978.2 + 38166 0.66 0.383639
Target:  5'- -gGCGugGCGCgGCU-UCCCCGUGCcGGa -3'
miRNA:   3'- ggUGU--UGCGgCGGcAGGGGCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 38648 0.66 0.382778
Target:  5'- uCCGCcgucccgAACGCCGaCGUgCCCgGCGCUu- -3'
miRNA:   3'- -GGUG-------UUGCGGCgGCA-GGGgCGCGAcc -5'
8192 3' -61 NC_001978.2 + 11745 0.66 0.378488
Target:  5'- gCCGCAACGCUGCCGUacugagugaagCggcuuaccgggucguCCgGCGCcGGu -3'
miRNA:   3'- -GGUGUUGCGGCGGCA-----------G---------------GGgCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 30312 0.66 0.37508
Target:  5'- uUCACGGCGUuuuCGUCGgCCCCgGCGUUGc -3'
miRNA:   3'- -GGUGUUGCG---GCGGCaGGGG-CGCGACc -5'
8192 3' -61 NC_001978.2 + 9628 0.66 0.366651
Target:  5'- uUCACuuCGUCGCCa--CCCGCGCg-- -3'
miRNA:   3'- -GGUGuuGCGGCGGcagGGGCGCGacc -5'
8192 3' -61 NC_001978.2 + 14558 0.66 0.366651
Target:  5'- gCGCGagaACGUCGCUGcCCCUGaCGgUGGc -3'
miRNA:   3'- gGUGU---UGCGGCGGCaGGGGC-GCgACC- -5'
8192 3' -61 NC_001978.2 + 37203 0.66 0.366651
Target:  5'- aUCACGuACGCCGCUugcgucuucgGUCCCaugGCGCccaGGg -3'
miRNA:   3'- -GGUGU-UGCGGCGG----------CAGGGg--CGCGa--CC- -5'
8192 3' -61 NC_001978.2 + 35492 0.67 0.358354
Target:  5'- gCCugGgaGCGCuCGCCuucacGUCCCCcaacGCGCcGGa -3'
miRNA:   3'- -GGugU--UGCG-GCGG-----CAGGGG----CGCGaCC- -5'
8192 3' -61 NC_001978.2 + 25508 0.67 0.358354
Target:  5'- gUguCGACGUcguuCGCCcgGUUCCCGCGCaUGGu -3'
miRNA:   3'- -GguGUUGCG----GCGG--CAGGGGCGCG-ACC- -5'
8192 3' -61 NC_001978.2 + 1098 0.67 0.350188
Target:  5'- uCgACAugGCCguuGCCGaCgCCGCuuGCUGGg -3'
miRNA:   3'- -GgUGUugCGG---CGGCaGgGGCG--CGACC- -5'
8192 3' -61 NC_001978.2 + 11037 0.67 0.350188
Target:  5'- gCCugGGCGCUGCggaCGUCUCCgGCGUgauccGGu -3'
miRNA:   3'- -GGugUUGCGGCG---GCAGGGG-CGCGa----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.