miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8192 3' -61 NC_001978.2 + 35400 0.66 0.401142
Target:  5'- uCCGCAACGaucaCGCaacaagCgCCGuCGCUGGg -3'
miRNA:   3'- -GGUGUUGCg---GCGgca---GgGGC-GCGACC- -5'
8192 3' -61 NC_001978.2 + 13433 0.69 0.269217
Target:  5'- uCCGugcCAAUGCCGCCGUCUUCGuUGCa-- -3'
miRNA:   3'- -GGU---GUUGCGGCGGCAGGGGC-GCGacc -5'
8192 3' -61 NC_001978.2 + 28768 0.7 0.214224
Target:  5'- gCCGCGAaGUCGCCGUugauggacaugcgCCCCGUGCg-- -3'
miRNA:   3'- -GGUGUUgCGGCGGCA-------------GGGGCGCGacc -5'
8192 3' -61 NC_001978.2 + 28060 0.8 0.041765
Target:  5'- uCC-CAAUGCCGCCGUCCUgGgGCUGa -3'
miRNA:   3'- -GGuGUUGCGGCGGCAGGGgCgCGACc -5'
8192 3' -61 NC_001978.2 + 30312 0.66 0.37508
Target:  5'- uUCACGGCGUuuuCGUCGgCCCCgGCGUUGc -3'
miRNA:   3'- -GGUGUUGCG---GCGGCaGGGG-CGCGACc -5'
8192 3' -61 NC_001978.2 + 9628 0.66 0.366651
Target:  5'- uUCACuuCGUCGCCa--CCCGCGCg-- -3'
miRNA:   3'- -GGUGuuGCGGCGGcagGGGCGCGacc -5'
8192 3' -61 NC_001978.2 + 1098 0.67 0.350188
Target:  5'- uCgACAugGCCguuGCCGaCgCCGCuuGCUGGg -3'
miRNA:   3'- -GgUGUugCGG---CGGCaGgGGCG--CGACC- -5'
8192 3' -61 NC_001978.2 + 5131 0.66 0.413692
Target:  5'- gUCACAGCGuCCGUCG-CCuuaauggcgucgauaCCGCGCUu- -3'
miRNA:   3'- -GGUGUUGC-GGCGGCaGG---------------GGCGCGAcc -5'
8192 3' -61 NC_001978.2 + 6304 0.66 0.410081
Target:  5'- aCCGCAguACGCCucuaCCGUCUCaaCGCUGa -3'
miRNA:   3'- -GGUGU--UGCGGc---GGCAGGGgcGCGACc -5'
8192 3' -61 NC_001978.2 + 5661 0.68 0.296784
Target:  5'- gUCAgGAUGCCGCgCGgcugaCCCGUGCcGGu -3'
miRNA:   3'- -GGUgUUGCGGCG-GCag---GGGCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 20593 0.67 0.326494
Target:  5'- gCAUGACGUgCGCCaacuucUCaCCCGCGUUGGu -3'
miRNA:   3'- gGUGUUGCG-GCGGc-----AG-GGGCGCGACC- -5'
8192 3' -61 NC_001978.2 + 40269 0.67 0.334258
Target:  5'- cUCGCuACGCCGCuaCGUCuUCCGUGCcguccUGGg -3'
miRNA:   3'- -GGUGuUGCGGCG--GCAG-GGGCGCG-----ACC- -5'
8192 3' -61 NC_001978.2 + 34400 0.66 0.392327
Target:  5'- gUCACAAC-CCGCCGgauaCCCGCuGCc-- -3'
miRNA:   3'- -GGUGUUGcGGCGGCag--GGGCG-CGacc -5'
8192 3' -61 NC_001978.2 + 11031 0.68 0.30401
Target:  5'- aCCGucACGCCGCCGgaaCCCGacaaCGCaUGGu -3'
miRNA:   3'- -GGUguUGCGGCGGCag-GGGC----GCG-ACC- -5'
8192 3' -61 NC_001978.2 + 38648 0.66 0.382778
Target:  5'- uCCGCcgucccgAACGCCGaCGUgCCCgGCGCUu- -3'
miRNA:   3'- -GGUG-------UUGCGGCgGCA-GGGgCGCGAcc -5'
8192 3' -61 NC_001978.2 + 2996 0.67 0.334258
Target:  5'- cCCAgGcucGCGCCucaauGCCGUCga-GCGCUGGg -3'
miRNA:   3'- -GGUgU---UGCGG-----CGGCAGgggCGCGACC- -5'
8192 3' -61 NC_001978.2 + 17643 0.68 0.30401
Target:  5'- gUCGcCAACGUCGCCGgucgCCuuGUGCUu- -3'
miRNA:   3'- -GGU-GUUGCGGCGGCa---GGggCGCGAcc -5'
8192 3' -61 NC_001978.2 + 27171 0.69 0.243752
Target:  5'- gCCACAAUGcCCGCCGaCUCCGCccgaaGCUuccGGu -3'
miRNA:   3'- -GGUGUUGC-GGCGGCaGGGGCG-----CGA---CC- -5'
8192 3' -61 NC_001978.2 + 11745 0.66 0.378488
Target:  5'- gCCGCAACGCUGCCGUacugagugaagCggcuuaccgggucguCCgGCGCcGGu -3'
miRNA:   3'- -GGUGUUGCGGCGGCA-----------G---------------GGgCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 37203 0.66 0.366651
Target:  5'- aUCACGuACGCCGCUugcgucuucgGUCCCaugGCGCccaGGg -3'
miRNA:   3'- -GGUGU-UGCGGCGG----------CAGGGg--CGCGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.