miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8199 3' -53.2 NC_001978.2 + 12579 0.66 0.794224
Target:  5'- --cCGgCGAUUGGUUCaCGAAgGACCc -3'
miRNA:   3'- cauGCgGCUGGCCAAGcGCUUgUUGG- -5'
8199 3' -53.2 NC_001978.2 + 27226 0.66 0.794224
Target:  5'- aUGCGCUcGCCGGUuucuUCcCGGGCGugCu -3'
miRNA:   3'- cAUGCGGcUGGCCA----AGcGCUUGUugG- -5'
8199 3' -53.2 NC_001978.2 + 35239 0.66 0.773989
Target:  5'- --cCGUCGuACCGGggCGCuGACGGCg -3'
miRNA:   3'- cauGCGGC-UGGCCaaGCGcUUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 31005 0.66 0.773989
Target:  5'- -cACGCCGACCuGggCGC--ACAugCc -3'
miRNA:   3'- caUGCGGCUGGcCaaGCGcuUGUugG- -5'
8199 3' -53.2 NC_001978.2 + 28045 0.66 0.773989
Target:  5'- cUACGUCGACCcGUcggCGCcggacacucaGGGCGACCu -3'
miRNA:   3'- cAUGCGGCUGGcCAa--GCG----------CUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 33869 0.66 0.763635
Target:  5'- -cACGUCGACaaacucaGGUUCGacguCGAGCGcCCa -3'
miRNA:   3'- caUGCGGCUGg------CCAAGC----GCUUGUuGG- -5'
8199 3' -53.2 NC_001978.2 + 12570 0.66 0.762592
Target:  5'- ---aGCCGACCGGgaaCGCcGACGagacggcagcacuGCCg -3'
miRNA:   3'- caugCGGCUGGCCaa-GCGcUUGU-------------UGG- -5'
8199 3' -53.2 NC_001978.2 + 3248 0.66 0.753141
Target:  5'- cGUGCGCUGGCaGGgUC-CGAACAucguugGCCu -3'
miRNA:   3'- -CAUGCGGCUGgCCaAGcGCUUGU------UGG- -5'
8199 3' -53.2 NC_001978.2 + 30216 0.66 0.753141
Target:  5'- -gACGCUGugCGGgaagaGCGcAACGGCa -3'
miRNA:   3'- caUGCGGCugGCCaag--CGC-UUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 4321 0.66 0.753141
Target:  5'- gGUACGCguACCGGUUCaaCGAacugagucACGACCu -3'
miRNA:   3'- -CAUGCGgcUGGCCAAGc-GCU--------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 12838 0.66 0.753141
Target:  5'- -cACGUCGGCgGGUg-GCGu-CGGCCg -3'
miRNA:   3'- caUGCGGCUGgCCAagCGCuuGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 26116 0.66 0.753141
Target:  5'- -gGCGCCGACgCuGcgCGCauccuGGGCGACCu -3'
miRNA:   3'- caUGCGGCUG-GcCaaGCG-----CUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 33392 0.67 0.746781
Target:  5'- -aGCGUCGAgcugaaggaacggguUCGGUUCGCGcugcccACAAUCg -3'
miRNA:   3'- caUGCGGCU---------------GGCCAAGCGCu-----UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 40360 0.67 0.742517
Target:  5'- aUGgGCCGACCGGgggacCGGcCGACCc -3'
miRNA:   3'- cAUgCGGCUGGCCaagc-GCUuGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 31521 0.67 0.742517
Target:  5'- aGUGCuCCGGCCGGaUUCGaaccGGCGGCUu -3'
miRNA:   3'- -CAUGcGGCUGGCC-AAGCgc--UUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 3105 0.67 0.742517
Target:  5'- ---aGCCgGACCGa--CGCGAACAcuGCCg -3'
miRNA:   3'- caugCGG-CUGGCcaaGCGCUUGU--UGG- -5'
8199 3' -53.2 NC_001978.2 + 28702 0.67 0.742517
Target:  5'- aUACGcCCGugCGGaUCGUGGuuguucGCgAACCg -3'
miRNA:   3'- cAUGC-GGCugGCCaAGCGCU------UG-UUGG- -5'
8199 3' -53.2 NC_001978.2 + 38902 0.67 0.742517
Target:  5'- gGUACGUCGGCgGGaaggCGCuuACGGCUu -3'
miRNA:   3'- -CAUGCGGCUGgCCaa--GCGcuUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 17118 0.67 0.742517
Target:  5'- -cACGaaGGCCGGUcgggcggacaUUG-GAACAACCa -3'
miRNA:   3'- caUGCggCUGGCCA----------AGCgCUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 12771 0.67 0.731777
Target:  5'- -cGCuGCCGACCGGcauuaCGCGccCGACUc -3'
miRNA:   3'- caUG-CGGCUGGCCaa---GCGCuuGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.