miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8199 5' -50.2 NC_001978.2 + 19996 0.66 0.91194
Target:  5'- gCGGGUGcggcacaucggaagGUUgCGCCCGuucuCAUCAACGg -3'
miRNA:   3'- -GCCCGCa-------------UAA-GUGGGCuu--GUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 25585 0.66 0.909218
Target:  5'- gGGGCGUG---ACCUGAGCggCAAg- -3'
miRNA:   3'- gCCCGCAUaagUGGGCUUGuaGUUgu -5'
8199 5' -50.2 NC_001978.2 + 23096 0.66 0.897846
Target:  5'- gGGGCGUugUUGCCCGcuucacuugugcugaAggACGUCGGCAa -3'
miRNA:   3'- gCCCGCAuaAGUGGGC---------------U--UGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 30367 0.66 0.897846
Target:  5'- cCGGGCGgcuucguacacgUCGCCCucggcggcuucGAGCAUgGACGc -3'
miRNA:   3'- -GCCCGCaua---------AGUGGG-----------CUUGUAgUUGU- -5'
8199 5' -50.2 NC_001978.2 + 15647 0.66 0.894883
Target:  5'- -cGGCGgcUUCGCUgGGGC-UCGACGg -3'
miRNA:   3'- gcCCGCauAAGUGGgCUUGuAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 36135 0.66 0.879371
Target:  5'- gCGGGUGag-UgGCCCGuguagcACGUCGGCGa -3'
miRNA:   3'- -GCCCGCauaAgUGGGCu-----UGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 13917 0.66 0.879371
Target:  5'- uGGGCuugaaggCGCCCGGAUacaggGUCAGCGu -3'
miRNA:   3'- gCCCGcauaa--GUGGGCUUG-----UAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 13552 0.67 0.871188
Target:  5'- cCGGGUgcugaaGUAcaCGCCCGGuucgGCGUCGACu -3'
miRNA:   3'- -GCCCG------CAUaaGUGGGCU----UGUAGUUGu -5'
8199 5' -50.2 NC_001978.2 + 30240 0.67 0.862729
Target:  5'- aCGGucGCGUAcacguagCGCUCGAacGCGUCAACGg -3'
miRNA:   3'- -GCC--CGCAUaa-----GUGGGCU--UGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 38656 0.67 0.862729
Target:  5'- cCGGGCGcuccgcCGuCCCGAACGcCGACGu -3'
miRNA:   3'- -GCCCGCauaa--GU-GGGCUUGUaGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 516 0.67 0.862729
Target:  5'- aGcGCGUAUgCGCCUGGGCAUCGu-- -3'
miRNA:   3'- gCcCGCAUAaGUGGGCUUGUAGUugu -5'
8199 5' -50.2 NC_001978.2 + 13333 0.67 0.84502
Target:  5'- -cGGCGUAauagcugugcCACCCGGACGcguUCAGCGu -3'
miRNA:   3'- gcCCGCAUaa--------GUGGGCUUGU---AGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 16345 0.67 0.84502
Target:  5'- aGuGGCGag--CGCCCcAACGUCGGCAg -3'
miRNA:   3'- gC-CCGCauaaGUGGGcUUGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 7831 0.67 0.84502
Target:  5'- aCGGGCGag-UCuCCCGaAGCggCGACGg -3'
miRNA:   3'- -GCCCGCauaAGuGGGC-UUGuaGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 35840 0.68 0.826319
Target:  5'- uGGGCGccgaccUUCccuuGCCCGA-CGUCGGCAu -3'
miRNA:   3'- gCCCGCau----AAG----UGGGCUuGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 10213 0.68 0.796597
Target:  5'- uCGGGCGUuca-GgCCGGAC-UCAACGc -3'
miRNA:   3'- -GCCCGCAuaagUgGGCUUGuAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 36881 0.68 0.79455
Target:  5'- uGGGCGUucggcagacgCGCCgGAACGUCGucgucgGCAg -3'
miRNA:   3'- gCCCGCAuaa-------GUGGgCUUGUAGU------UGU- -5'
8199 5' -50.2 NC_001978.2 + 16179 0.68 0.786291
Target:  5'- aCGGGaa---UCGCCCcGACGUCGGCAg -3'
miRNA:   3'- -GCCCgcauaAGUGGGcUUGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 13615 0.69 0.775808
Target:  5'- cCGGGCGUGUacuucagCACCCGGuUAcCGACc -3'
miRNA:   3'- -GCCCGCAUAa------GUGGGCUuGUaGUUGu -5'
8199 5' -50.2 NC_001978.2 + 7962 0.69 0.76516
Target:  5'- gCGGGCGUcacgccgUCGCCCGG--GUCgAGCAc -3'
miRNA:   3'- -GCCCGCAua-----AGUGGGCUugUAG-UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.