miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8202 5' -52.1 NC_001978.2 + 19470 0.66 0.841581
Target:  5'- -gGGGCGCacGAucGGUGA-CGccGUGACCg -3'
miRNA:   3'- gaCUCGCG--CU--UCACUaGCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 6633 0.66 0.841581
Target:  5'- uUGGGCGCGAcGGUaGA-CGA--CGACCu -3'
miRNA:   3'- gACUCGCGCU-UCA-CUaGCUucGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 18713 0.66 0.841581
Target:  5'- aUGAGCGgGucGau-UCGGAGCGcuGCCg -3'
miRNA:   3'- gACUCGCgCuuCacuAGCUUCGC--UGG- -5'
8202 5' -52.1 NC_001978.2 + 26545 0.66 0.841581
Target:  5'- gUGcGCGCGGAGcuUGcccGUaCGAGGuCGACCa -3'
miRNA:   3'- gACuCGCGCUUC--AC---UA-GCUUC-GCUGG- -5'
8202 5' -52.1 NC_001978.2 + 31303 0.66 0.841581
Target:  5'- -cGAcGCGCuGAGUGGUgaCGguGUGGCCg -3'
miRNA:   3'- gaCU-CGCGcUUCACUA--GCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 16412 0.66 0.832415
Target:  5'- gCUGGGCuuCGAAgcGUGGUCGGucuacccgGGCGGCg -3'
miRNA:   3'- -GACUCGc-GCUU--CACUAGCU--------UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 28962 0.66 0.832415
Target:  5'- gCUGAGcCGUGuacauGUGAauaucgaagUCGGAGCcGCCg -3'
miRNA:   3'- -GACUC-GCGCuu---CACU---------AGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 22320 0.66 0.823024
Target:  5'- aUGGGCGacugGAAGacGUCGAAgGCGACg -3'
miRNA:   3'- gACUCGCg---CUUCacUAGCUU-CGCUGg -5'
8202 5' -52.1 NC_001978.2 + 36542 0.66 0.823024
Target:  5'- gCUGAGCGUGucGgcucaugacugGGUCGgcGUGGCa -3'
miRNA:   3'- -GACUCGCGCuuCa----------CUAGCuuCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 26603 0.66 0.823024
Target:  5'- cCUGGGCGUucGGgucguacucGAUCGGcAGCGACa -3'
miRNA:   3'- -GACUCGCGcuUCa--------CUAGCU-UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 8583 0.66 0.822073
Target:  5'- --cGGCGCGAaccggccuuguucAGgGAUCGA-GCGGCUg -3'
miRNA:   3'- gacUCGCGCU-------------UCaCUAGCUuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 22936 0.66 0.822073
Target:  5'- aUGAGCGCGA-------GAAGCGACg -3'
miRNA:   3'- gACUCGCGCUucacuagCUUCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 25650 0.66 0.813417
Target:  5'- gCUGGGCGCcguauGgcGUGuucCGggGUGACg -3'
miRNA:   3'- -GACUCGCG-----CuuCACua-GCuuCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 30299 0.66 0.813417
Target:  5'- -cGAGgGCGAcGUGuaCGAAGCcGCCc -3'
miRNA:   3'- gaCUCgCGCUuCACuaGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 35571 0.66 0.803605
Target:  5'- -cGAGC-CGGAGacggcgccccUGAgcgUCGgcGCGACCg -3'
miRNA:   3'- gaCUCGcGCUUC----------ACU---AGCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 24546 0.66 0.793601
Target:  5'- gUGAGUaGCGAAGUGuucaaugcguUCGucGGCGGCg -3'
miRNA:   3'- gACUCG-CGCUUCACu---------AGCu-UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 3550 0.67 0.773062
Target:  5'- -cGGGCGCu--GUGGUUGAGGU-ACCg -3'
miRNA:   3'- gaCUCGCGcuuCACUAGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 37861 0.67 0.762552
Target:  5'- cCUGGGCGCcaugcuGGGUGAcccauUCGA-GCGGCa -3'
miRNA:   3'- -GACUCGCGc-----UUCACU-----AGCUuCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 21268 0.67 0.751898
Target:  5'- cCUGAGCGCGcuGGUuacGGcCGAcgaagacgAGUGACCg -3'
miRNA:   3'- -GACUCGCGCu-UCA---CUaGCU--------UCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 1359 0.68 0.719203
Target:  5'- -cGGGuCGCGAAGUgGAUCGAAGaguuuugcuaccUGACg -3'
miRNA:   3'- gaCUC-GCGCUUCA-CUAGCUUC------------GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.