miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 30691 0.66 0.670898
Target:  5'- cGACUgAGCGccGGuACGUGCuCGAcGCCc -3'
miRNA:   3'- -CUGAgUCGUu-CCuUGCGCG-GCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 13639 0.66 0.670898
Target:  5'- cGACUCAGCGGcaauGGcgacuCGCGCCuaugcggucGgcGCCg -3'
miRNA:   3'- -CUGAGUCGUU----CCuu---GCGCGG---------CuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 35554 0.66 0.670898
Target:  5'- cACUCAGCGccGGAUGUcgaGCCGGAGaCg -3'
miRNA:   3'- cUGAGUCGUucCUUGCG---CGGCUUCgG- -5'
8203 5' -54.7 NC_001978.2 + 21571 0.66 0.670898
Target:  5'- -cCUCAGCGcacGGGGugcACGuCGgCGGAGUCg -3'
miRNA:   3'- cuGAGUCGU---UCCU---UGC-GCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 3116 0.66 0.670898
Target:  5'- cGGCUCGcGUAAGGAGauagUGaCGCCGGaauGGCUc -3'
miRNA:   3'- -CUGAGU-CGUUCCUU----GC-GCGGCU---UCGG- -5'
8203 5' -54.7 NC_001978.2 + 16340 0.66 0.670898
Target:  5'- cGACUCcGCGA--AGCGCcuGCCGAuuGCCa -3'
miRNA:   3'- -CUGAGuCGUUccUUGCG--CGGCUu-CGG- -5'
8203 5' -54.7 NC_001978.2 + 2623 0.66 0.669772
Target:  5'- uGGCUCAGuCGAccgucacGGcACGCGUCGuacacGGCCu -3'
miRNA:   3'- -CUGAGUC-GUU-------CCuUGCGCGGCu----UCGG- -5'
8203 5' -54.7 NC_001978.2 + 38236 0.66 0.659623
Target:  5'- uGCUcCGGCAcgGGGAAgcCGCGCCac-GCCu -3'
miRNA:   3'- cUGA-GUCGU--UCCUU--GCGCGGcuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 21437 0.66 0.658494
Target:  5'- gGACUCAGCGAcgccccagacgacGGAAUGCGgCacAGCg -3'
miRNA:   3'- -CUGAGUCGUU-------------CCUUGCGCgGcuUCGg -5'
8203 5' -54.7 NC_001978.2 + 36008 0.66 0.658494
Target:  5'- cGACcCGGgcguugugugcgaCAAGGAACuaGCgGAAGCCc -3'
miRNA:   3'- -CUGaGUC-------------GUUCCUUGcgCGgCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 35909 0.66 0.648321
Target:  5'- cGACgUCgGGCAAGGGAaggucgGCGCCcAGGUCg -3'
miRNA:   3'- -CUG-AG-UCGUUCCUUg-----CGCGGcUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 31401 0.66 0.641532
Target:  5'- aGCUCAGCgGAagagcgccgcaacccGGGACGCgaaagcgugcacGCgGAAGCCg -3'
miRNA:   3'- cUGAGUCG-UU---------------CCUUGCG------------CGgCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 11644 0.66 0.637003
Target:  5'- ----gGGCAGGGAcCgGCGCCGGacgacccgguaAGCCg -3'
miRNA:   3'- cugagUCGUUCCUuG-CGCGGCU-----------UCGG- -5'
8203 5' -54.7 NC_001978.2 + 3212 0.66 0.637003
Target:  5'- -cCUCAGCuugcuucuucaGGGGAACGCGUUccuuGCCg -3'
miRNA:   3'- cuGAGUCG-----------UUCCUUGCGCGGcuu-CGG- -5'
8203 5' -54.7 NC_001978.2 + 39903 0.66 0.633607
Target:  5'- uGACgcuccggCAGCAAGGGcggaagagcgGCuugccgaacuugaaGcCGCCGAAGCCc -3'
miRNA:   3'- -CUGa------GUCGUUCCU----------UG--------------C-GCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 27810 0.66 0.625681
Target:  5'- cACUaugAGUuGGGcgGACGCuucGCCGAAGCCg -3'
miRNA:   3'- cUGAg--UCGuUCC--UUGCG---CGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 16660 0.66 0.625681
Target:  5'- aGGCUgGGC-AGGAaaccgGCGCGCUu--GCCg -3'
miRNA:   3'- -CUGAgUCGuUCCU-----UGCGCGGcuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 17682 0.66 0.625681
Target:  5'- cGGCUCAGCGGGcuugucaGGCGUGgUCG-AGCCg -3'
miRNA:   3'- -CUGAGUCGUUCc------UUGCGC-GGCuUCGG- -5'
8203 5' -54.7 NC_001978.2 + 2559 0.66 0.625681
Target:  5'- aGAgUUAGUcGGGAACGCcucaaCCGGgaAGCCg -3'
miRNA:   3'- -CUgAGUCGuUCCUUGCGc----GGCU--UCGG- -5'
8203 5' -54.7 NC_001978.2 + 22803 0.66 0.625681
Target:  5'- cGACggCAGCGAcGAacACGaCGCCGAcgaauGCCa -3'
miRNA:   3'- -CUGa-GUCGUUcCU--UGC-GCGGCUu----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.