Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8205 | 5' | -56.4 | NC_001978.2 | + | 28124 | 0.65 | 0.599671 |
Target: 5'- gGCugGGCGGguaUCGACcuucgGCACCCUAcguacaaccuuuacGCCg -3' miRNA: 3'- -CGugUCGUUg--AGCUG-----CGUGGGGU--------------CGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 41393 | 0.66 | 0.569842 |
Target: 5'- uGCACAGC-GCUUGcACGUugCCUucaacgucuucGCCg -3' miRNA: 3'- -CGUGUCGuUGAGC-UGCGugGGGu----------CGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 32298 | 0.66 | 0.547981 |
Target: 5'- aGCGCuucGCGAa-UGGCGCgcugccgcucaGCCUCAGCCg -3' miRNA: 3'- -CGUGu--CGUUgaGCUGCG-----------UGGGGUCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 6939 | 0.66 | 0.58859 |
Target: 5'- cGCGCcGUcagugguuucagugGACUCGACagaaGCcgACUCCGGCCg -3' miRNA: 3'- -CGUGuCG--------------UUGAGCUG----CG--UGGGGUCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 13263 | 0.66 | 0.547981 |
Target: 5'- cCACAGCAA----GC-CGCCCCAGUCg -3' miRNA: 3'- cGUGUCGUUgagcUGcGUGGGGUCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 34204 | 0.66 | 0.580854 |
Target: 5'- gGCACGcucCGGCg-GACGCACaCCCGGgCa -3' miRNA: 3'- -CGUGUc--GUUGagCUGCGUG-GGGUCgG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 37943 | 0.66 | 0.569842 |
Target: 5'- uCACGcGCGACguuguacggGACgGCGCCCCcGCCg -3' miRNA: 3'- cGUGU-CGUUGag-------CUG-CGUGGGGuCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 11862 | 0.66 | 0.591911 |
Target: 5'- cGCugA-CGGCUCGACGUGgCCUgaguauGGCCc -3' miRNA: 3'- -CGugUcGUUGAGCUGCGUgGGG------UCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 30351 | 0.66 | 0.569842 |
Target: 5'- gGCA-AGCGACUCagcaaggaACGCGCCgaAGCCg -3' miRNA: 3'- -CGUgUCGUUGAGc-------UGCGUGGggUCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 38200 | 0.66 | 0.591911 |
Target: 5'- aCGuCAGCGGCUCGccccgUGCGCuCCCAcaucuGCCa -3' miRNA: 3'- cGU-GUCGUUGAGCu----GCGUG-GGGU-----CGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 17598 | 0.66 | 0.580854 |
Target: 5'- gGCGacguuGGCGGCUCGAC-CACgCCUgacaAGCCc -3' miRNA: 3'- -CGUg----UCGUUGAGCUGcGUG-GGG----UCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 31084 | 0.66 | 0.591911 |
Target: 5'- cGCugAGCGACU-GACGaACgCCGGgCg -3' miRNA: 3'- -CGugUCGUUGAgCUGCgUGgGGUCgG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 36727 | 0.66 | 0.547981 |
Target: 5'- uCACGG-AGCcggaGACgGCGCCCCAGgCCg -3' miRNA: 3'- cGUGUCgUUGag--CUG-CGUGGGGUC-GG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 9687 | 0.66 | 0.590803 |
Target: 5'- cCugGGCAAuggccuucgucauCUCGGCGCcguucaGCCCCAuggacuuguacGCCg -3' miRNA: 3'- cGugUCGUU-------------GAGCUGCG------UGGGGU-----------CGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 22255 | 0.67 | 0.494635 |
Target: 5'- uGCGC-GUAugGCUCGACGCcgacggcaACCCgAcGCCg -3' miRNA: 3'- -CGUGuCGU--UGAGCUGCG--------UGGGgU-CGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 30653 | 0.67 | 0.494635 |
Target: 5'- -uGCGGCGcuugaagacguGCU-GACGguCCCCAGCg -3' miRNA: 3'- cgUGUCGU-----------UGAgCUGCguGGGGUCGg -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 10618 | 0.67 | 0.494635 |
Target: 5'- cGCAuccuguCGGCAGCgUCGuCGUugCUCAGCg -3' miRNA: 3'- -CGU------GUCGUUG-AGCuGCGugGGGUCGg -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 31534 | 0.67 | 0.494635 |
Target: 5'- aCACGGCA---CGGCGCuugACUCCGGCUu -3' miRNA: 3'- cGUGUCGUugaGCUGCG---UGGGGUCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 14287 | 0.67 | 0.484243 |
Target: 5'- gGCGCAGCGAagcCGAagUGCGCCUagCGGCUu -3' miRNA: 3'- -CGUGUCGUUga-GCU--GCGUGGG--GUCGG- -5' |
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8205 | 5' | -56.4 | NC_001978.2 | + | 39338 | 0.67 | 0.537149 |
Target: 5'- cGCAUucagcGCGACcCGAUcaCGCUCCGGCCg -3' miRNA: 3'- -CGUGu----CGUUGaGCUGc-GUGGGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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