miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8205 5' -56.4 NC_001978.2 + 21487 0.69 0.405289
Target:  5'- cGguCGGgGGCUCGACuccgccgacguGCACCCCGuGCg -3'
miRNA:   3'- -CguGUCgUUGAGCUG-----------CGUGGGGU-CGg -5'
8205 5' -56.4 NC_001978.2 + 18822 0.7 0.326803
Target:  5'- cGCGCGGCGuuccccgcuaUCGACGCugcggagcGCCUgAGCCu -3'
miRNA:   3'- -CGUGUCGUug--------AGCUGCG--------UGGGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 30591 0.7 0.34323
Target:  5'- cGUACGuGCGuGCUCGAUGCGCUUgAGCUu -3'
miRNA:   3'- -CGUGU-CGU-UGAGCUGCGUGGGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 34858 0.7 0.34323
Target:  5'- gGCugGGaUGACUCGACGCGccgguuguacuCCCCAGg- -3'
miRNA:   3'- -CGugUC-GUUGAGCUGCGU-----------GGGGUCgg -5'
8205 5' -56.4 NC_001978.2 + 15461 0.69 0.385941
Target:  5'- cGCugAaCAACUccgucgaccuugcCGACGuCGCCCCuGCCg -3'
miRNA:   3'- -CGugUcGUUGA-------------GCUGC-GUGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 15784 0.69 0.385941
Target:  5'- gGCGCAGCGugguacacgaacaACaCGG-GCACCCCgucGGCCg -3'
miRNA:   3'- -CGUGUCGU-------------UGaGCUgCGUGGGG---UCGG- -5'
8205 5' -56.4 NC_001978.2 + 17686 0.69 0.395999
Target:  5'- aGUACGGCuACggggcaCGugGCGCCCaGGUCa -3'
miRNA:   3'- -CGUGUCGuUGa-----GCugCGUGGGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 22608 0.69 0.395999
Target:  5'- cGCAUGGUGACcggcacucagCGACGCGCCCggUAGCg -3'
miRNA:   3'- -CGUGUCGUUGa---------GCUGCGUGGG--GUCGg -5'
8205 5' -56.4 NC_001978.2 + 15946 0.69 0.405289
Target:  5'- gGCGCgacgGGCGccgACUCGACGU-UCCCGGUCc -3'
miRNA:   3'- -CGUG----UCGU---UGAGCUGCGuGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 20337 0.7 0.326803
Target:  5'- cGCACGGCGcgagagacggaGCU-GACGCcggucACCCCggaAGCCg -3'
miRNA:   3'- -CGUGUCGU-----------UGAgCUGCG-----UGGGG---UCGG- -5'
8205 5' -56.4 NC_001978.2 + 23509 0.71 0.31881
Target:  5'- -gGCAGCGGCgaaggaguaCGACGCGCcgaaCCCGGCa -3'
miRNA:   3'- cgUGUCGUUGa--------GCUGCGUG----GGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 13806 0.71 0.303269
Target:  5'- cCAUAGCGACggcCGGagcCGCACCCgUGGCCa -3'
miRNA:   3'- cGUGUCGUUGa--GCU---GCGUGGG-GUCGG- -5'
8205 5' -56.4 NC_001978.2 + 33651 0.76 0.151639
Target:  5'- -aACGGCAAgaCGACGaCGCUUCAGCCg -3'
miRNA:   3'- cgUGUCGUUgaGCUGC-GUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 13106 0.75 0.156351
Target:  5'- gGUACGGCGacgguaggaaugccGCUCGACGCugCCgaccccgacacgcuuCAGCCu -3'
miRNA:   3'- -CGUGUCGU--------------UGAGCUGCGugGG---------------GUCGG- -5'
8205 5' -56.4 NC_001978.2 + 23263 0.74 0.183945
Target:  5'- gGCuCAGCucUUCGGCgGCACCCCGGUUg -3'
miRNA:   3'- -CGuGUCGuuGAGCUG-CGUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 1828 0.74 0.187491
Target:  5'- aGCACAGCGACcuauUCGACGCGCUgacgcugggcagugCC-GCCc -3'
miRNA:   3'- -CGUGUCGUUG----AGCUGCGUGG--------------GGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 654 0.73 0.228169
Target:  5'- aCGCGGCGuACaCGGCGCgggugGCCUCAGCCu -3'
miRNA:   3'- cGUGUCGU-UGaGCUGCG-----UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 40644 0.72 0.246945
Target:  5'- gGUugAGCGAC-CGGCGUugccuCCCUAGCUc -3'
miRNA:   3'- -CGugUCGUUGaGCUGCGu----GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 1313 0.71 0.28106
Target:  5'- uGCGCGGCAcauucccgcugACgCGACGguUCCCAGUg -3'
miRNA:   3'- -CGUGUCGU-----------UGaGCUGCguGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 8228 0.71 0.28106
Target:  5'- gGCuCAGCGGCUCG-CGUGCCgUAuGCCg -3'
miRNA:   3'- -CGuGUCGUUGAGCuGCGUGGgGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.