miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8205 5' -56.4 NC_001978.2 + 239 0.68 0.453721
Target:  5'- -aGCGGCAGCgUUGGCGU-UCCCGGUCc -3'
miRNA:   3'- cgUGUCGUUG-AGCUGCGuGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 654 0.73 0.228169
Target:  5'- aCGCGGCGuACaCGGCGCgggugGCCUCAGCCu -3'
miRNA:   3'- cGUGUCGU-UGaGCUGCG-----UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 1313 0.71 0.28106
Target:  5'- uGCGCGGCAcauucccgcugACgCGACGguUCCCAGUg -3'
miRNA:   3'- -CGUGUCGU-----------UGaGCUGCguGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 1665 0.7 0.360244
Target:  5'- -gGCGGCAGCgaugaucugUCGcugaGCGuCGCCCCGGUCg -3'
miRNA:   3'- cgUGUCGUUG---------AGC----UGC-GUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 1828 0.74 0.187491
Target:  5'- aGCACAGCGACcuauUCGACGCGCUgacgcugggcagugCC-GCCc -3'
miRNA:   3'- -CGUGUCGUUG----AGCUGCGUGG--------------GGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 2228 0.77 0.127061
Target:  5'- -uGCGGCAACcaugUCGACGCACCgcgcacgaacugacUCAGCCg -3'
miRNA:   3'- cgUGUCGUUG----AGCUGCGUGG--------------GGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 4450 0.7 0.34323
Target:  5'- uCGCAGCGACg----GCGCCCCuGCCc -3'
miRNA:   3'- cGUGUCGUUGagcugCGUGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 4525 0.67 0.515715
Target:  5'- uCGCAGCGuGC-CGGaagacgUGCGCCCCAGUa -3'
miRNA:   3'- cGUGUCGU-UGaGCU------GCGUGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 4797 0.67 0.484243
Target:  5'- cGCGauuccCAGCcgGACggCGACGuUGCCCCGGCUu -3'
miRNA:   3'- -CGU-----GUCG--UUGa-GCUGC-GUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 6489 0.76 0.143401
Target:  5'- -gGCAGCGACgUCgGGCGCcaauuucCCCCAGCCu -3'
miRNA:   3'- cgUGUCGUUG-AG-CUGCGu------GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 6939 0.66 0.58859
Target:  5'- cGCGCcGUcagugguuucagugGACUCGACagaaGCcgACUCCGGCCg -3'
miRNA:   3'- -CGUGuCG--------------UUGAGCUG----CG--UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 8228 0.71 0.28106
Target:  5'- gGCuCAGCGGCUCG-CGUGCCgUAuGCCg -3'
miRNA:   3'- -CGuGUCGUUGAGCuGCGUGGgGU-CGG- -5'
8205 5' -56.4 NC_001978.2 + 8602 0.67 0.515715
Target:  5'- gGCGCgaAGCAucgggGCaCGGCGCGaaCCGGCCu -3'
miRNA:   3'- -CGUG--UCGU-----UGaGCUGCGUggGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 8797 0.67 0.526391
Target:  5'- aGCGCAGaGACaCGAaGCGCgCCGGUCg -3'
miRNA:   3'- -CGUGUCgUUGaGCUgCGUGgGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 9176 0.7 0.334943
Target:  5'- uCAcCGGCGGCUUcacccaGGCGCuuaGCCUCAGCCg -3'
miRNA:   3'- cGU-GUCGUUGAG------CUGCG---UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 9687 0.66 0.590803
Target:  5'- cCugGGCAAuggccuucgucauCUCGGCGCcguucaGCCCCAuggacuuguacGCCg -3'
miRNA:   3'- cGugUCGUU-------------GAGCUGCG------UGGGGU-----------CGG- -5'
8205 5' -56.4 NC_001978.2 + 9826 0.67 0.484243
Target:  5'- aGCuuCAGCAACgCGucuUGCAuguCCUCAGCCu -3'
miRNA:   3'- -CGu-GUCGUUGaGCu--GCGU---GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 10618 0.67 0.494635
Target:  5'- cGCAuccuguCGGCAGCgUCGuCGUugCUCAGCg -3'
miRNA:   3'- -CGU------GUCGUUG-AGCuGCGugGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 10691 0.69 0.405289
Target:  5'- cGCugAGCAACgaCGACGCugCCgaCAGg- -3'
miRNA:   3'- -CGugUCGUUGa-GCUGCGugGG--GUCgg -5'
8205 5' -56.4 NC_001978.2 + 10784 0.67 0.48321
Target:  5'- cCACAGCGgaagcaaGCgaCGACGCAaagccgCCCAGCUu -3'
miRNA:   3'- cGUGUCGU-------UGa-GCUGCGUg-----GGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.